Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq3 143 2e-29 seq1 129 5e-25 >seq3 Length=3165745 Score = 143 bits (158), Expect = 2e-29 Identities = 158/208 (76%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| ||||| || ||| | || || | || ||||| || ||| Sbjct 2529460 ATGCAAATCTTTGTCAAGACATTGACGGGAAAAACTATTACCTTGGAGGTGGAATCATCT 2529519 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || ||||| |||| |||| || | ||| || |||||||| |||||||| || Sbjct 2529520 GATACAATCGATAACGTCA---AAGCCAAGATTCAG-GATAAAGAAGGTATTCCACCAGA 2529575 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||| || | || ||||| || |||||||||||||| | || || ||| |||||| Sbjct 2529576 CCAACAACGTTTGATCTTTGCTGGTAAACAATTAGAAGACGGACGTACATTGGCCGATTA 2529635 Query 25175 CAATATTCAAAAAGAATCCACGCTACAT 25202 ||| |||||||||||| ||| || ||| Sbjct 2529636 CAACATTCAAAAAGAAAGCACTCTTCAT 2529663 Score = 138 bits (152), Expect = 1e-27 Identities = 162/217 (75%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 24990 AACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTG 25049 |||| || |||||||| |||||||| ||||||||||| || | ||||| | || || Sbjct 2529223 AACGCCACTATGCAAATCTTTGTAAAAACTTTGACCGGAAAGACGATCACTTTGGAGGTT 2529282 Query 25050 GAGTCGTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGAT 25105 || || || || || || || |||| | || || | ||| ||||||||||| || Sbjct 2529283 GAATCTTCGGATACCATTGACAACGTCA---AGGCCAAGATTCAA-GACAAAGAAGGTAT 2529338 Query 25106 TCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGT 25165 |||||| || ||||| || |||| ||||| || || ||||| ||||||| ||| || | Sbjct 2529339 TCCACCAGATCAACAACGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGTACATT 2529398 Query 25166 GGGCGATTACAATATTCAAAAAGAATCCACGCTACAT 25202 || |||||||||||| ||||| ||| ||| || ||| Sbjct 2529399 GGCCGATTACAATATCCAAAAGGAAAGCACACTCCAT 2529435 >seq1 Length=6968282 Score = 129 bits (142), Expect = 5e-25 Identities = 158/213 (74%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| ||||| ||||| | || || | || || || || ||| Sbjct 6897573 ATGCAAATCTTTGTCAAGACCTTGACTGGTAAGACAATTACCCTTGAGGTTGAATCCTCT 6897632 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| || || || |||| || | || ||||||||||| || ||||| ||| Sbjct 6897633 GATACTATTGA--CAATGTCAAAGCCAAGATCCAA-GACAAAGAAGGTATCCCACCAGAC 6897689 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | || |||||||| || ||||| ||||| | ||||||| ||| || ||| Sbjct 6897690 CAACAAAGATTGATCTTTGCCGGTAAGCAATTGGAAGACGGTCGCACTTTGGCTGACTAC 6897749 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTG 25208 || || ||||| || ||||| || || || ||| Sbjct 6897750 AACATCCAAAAGGAGTCCACACTTCACTTGGTG 6897782 Score = 125 bits (138), Expect = 6e-24 Identities = 171/236 (72%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || ||||| || || | |||||| | ||||| || || || Sbjct 6898257 ATGCAAATCTTTGTCAAAACATTGACAGGAAAGACGATCACATTGGAAGTTGAATCTTCC 6898316 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || |||| || | ||| ||||||||||| || || || ||| Sbjct 6898317 GACACGATTGA--CAATGTCAAAGCCAAGATTCAA-GACAAAGAAGGTATCCCGCCAGAC 6898373 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| || | || ||||| || |||||||| ||||| | || ||| ||| |||||| Sbjct 6898374 CAACAACGTTTGATCTTTGCAGGTAAACAATTGGAAGACGGCCGTACTTTGGCTGATTAC 6898433 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 || || ||||| ||||| || | || || ||| | | || | || ||||| || Sbjct 6898434 AACATCCAAAAGGAATCTACCTTGCACTTGGTGTTGCGTCTTCGTGGTGGAAACTA 6898489 Score = 113 bits (124), Expect = 4e-20 Identities = 154/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | || || || | |||||| | ||||| || Sbjct 6897801 ATGCAAATTTTTGTCAAGACACTAACAGGAAAGACAATCACACTAGAAGTCGAAAGCAGC 6897860 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||||| || |||| |||| || | || ||||||||||| || ||||| || Sbjct 6897861 GACACTATTGAYAACGTCA---AAGCCAAGATCCAA-GACAAAGAAGGTATCCCACCAGA 6897916 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||| || | || ||||| || |||||||| ||||| | ||||| ||| ||||| Sbjct 6897917 CCAACAACGTTTGATCTTTGCAGGTAAACAATTGGAAGACGGACGCACATTGGCTGATTA 6897976 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||| ||||| |||||||| || || || || || Sbjct 6897977 CAACATTCAGAAAGAATCTACACTCCACTTGGT 6898009 Score = 113 bits (124), Expect = 4e-20 Identities = 154/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | || ||||| | |||||| | ||||| || | Sbjct 6898029 ATGCAAATCTTTGTCAAGACACTTACTGGTAAGACAATCACACTAGAAGTCGAAAGCAGT 6898088 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || |||| |||| || | || ||||||||||| |||||||| || Sbjct 6898089 GATACAATTGATAATGTCA---AAGCCAAGATCCAA-GACAAAGAAGGTATTCCACCAGA 6898144 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||| || | ||||| || || || ||||| ||||| | ||||| ||| || || Sbjct 6898145 CCAACAACGTCTCATTTTCGCTGGTAAGCAATTGGAAGACGGACGCACATTGGCTGACTA 6898204 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||| || |||||||| ||||| ||||||| || Sbjct 6898205 CAACATCCAAAAAGAGTCCACCTTACATTTGGT 6898237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327693691270