Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2 241 1e-58 >seq2 Length=3834998 Score = 241 bits (266), Expect = 1e-58 Identities = 580/860 (67%), Gaps = 22/860 (3%) Strand=Plus/Minus Query 92800 CATTTTTG-GTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATAT 92858 ||| |||| |||||| |||| ||||| |||||||| || |||||||| ||||| || Sbjct 1008052 CATCTTTGAGTATTCGGCAACCTTTTTCTCAAAGAAGTTAGTCTTTCCGGTTAAAGAGAT 1007993 Query 92859 CGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTC---ACCGATCAACTC 92913 | || | | || ||| || | || || || |||||| ||| ||| | Sbjct 1007992 GTTCTCCATCCAATCGAATGGGTTGGTTGCATTGTATGCCTTTTCGTTACC---CAAAGC 1007936 Query 92914 GTACAATAATCTATCAGCTACA-AATTCTATGTACTGAGACATCAAATCACAATTCATTC 92972 ||||| | |||||| ||| ||||| ||||| ||| ||||||| | | ||||||| Sbjct 1007935 CACCAATAGACGATCAGC-ACAGAATTCAATGTATTGACACATCAATTTGGAGTTCATTC 1007877 Query 92973 CTAGAAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCT 93031 | | | | | || |||| ||| || || |||||| || |||||| || |||||| Sbjct 1007876 CGATTA-AGTTGCATGGTAAAGCATCAGTTAAGAAACTTTGTTCGATTGAGACAGCTTCT 1007818 Query 93032 TTCAAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACG-ACATAATTGTACATTAA 93090 | | || | | ||| || | | | | |||| | || || ||| || Sbjct 1007817 GTGATAATCTTGTTCACTGTATCAGGATGAGCGCGCT-TACGCAAATGGCTGAACAACAA 1007759 Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGAT-ATCAACTCATTGCTGAATGTTA 93149 || || || || || ||||||||||| |||| || | ||||| |||||| |||||| | Sbjct 1007758 ACATGCGAAATCAGTGTGTAAACCTTCATCTC-TGCTGATCAATTCATTGGAGAATGTCA 1007700 Query 93150 AACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaa 93209 |||| || | || ||| || ||||||||||| || || || || |||| || | Sbjct 1007699 AACCGGGCATCAATCCACGCTTCTTGAGCCAGAAGATACTTGCGAATGAACCACTGAAGA 1007640 Query 93210 aTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGC 93269 | |||||||| ||||| ||||| || || | |||||| ||||| | || || Sbjct 1007639 AGATACCTTCAACGGCAGCAAAAGCGACCAAACGTTCAGCAAATGTGGCCCGCTTGTCAG 1007580 Query 93270 TGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGT 93329 ||||| |||| |||||||| || ||| | || | || | |||||| ||||| | Sbjct 1007579 AAATCCACTTTAGTGCCCAATCTGCCTTTGTTTTGACGACTGGAATTGTTTCAATAGCAT 1007520 Query 93330 TAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACA 93389 || | | | || || | || | || || ||||||||||| || |||| ||| || Sbjct 1007519 CGAACAAGAACTCGCGTTGATCAGGGTCACGGATGTATGTATCAATCAACAAAGAGTAAG 1007460 Query 93390 TTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCG-TG 93448 |||| || || | || ||||| |||||||| || ||||| ||||| ||||| | || Sbjct 1007459 TTTCTGAGTGAATGTTTTCCATCATGATTTGGAAACCATAGAAGCATCTTGCTTCTGCTG 1007400 Query 93449 ATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCT 93508 | || |||||| |||| || || | ||||||||||| |||||||| || || Sbjct 1007399 CT-TGAACTTCTCCGCTGAATCGTTCGACCAAGTTTTCATTGACGATACCATCAGAAGCG 1007341 Query 93509 GCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC---TTATCC 93565 ||||| || ||||| | || || ||||| || | || || | | || ||| Sbjct 1007340 GCAAAGAATGCCAAAACGTGAGAGATGAAATGACGTTCGTTGTCGTTCAACTTGTTGTCC 1007281 Query 93566 CAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCT 93625 |||||| | |||||| || | ||| | ||||| | ||||| || || ||||||||| Sbjct 1007280 CAATCGTGCAAATCTTTGGACAAATCAATCTCTTCTGCGGTCCAGAAAGAAGCTTCTGCT 1007221 Query 93626 TTTTTGTACATATCCCATAT 93645 ||||||||||| | ||| || Sbjct 1007220 TTTTTGTACATTTGCCAAAT 1007201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860396275920