Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq3 159 3e-34 seq1 154 1e-32 seq2 145 6e-30 >seq3 Length=3165745 Score = 159 bits (176), Expect = 3e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| |||||||| ||||| || ||| ||||| | || || ||| | | Sbjct 2529232 ATGCAAATCTTTGTAAAAACTTTGACCGGAAAGACGATCACTTTGGAGGTTGAATCTTCG 2529291 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | |||| || ||||||||||| || ||||||||||| |||||| Sbjct 2529292 GATACCATTGACAACGTCAAGGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGATCAA 2529351 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| ||||| || || || || || ||| || || | |||||||||| Sbjct 2529352 CAACGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGTACATTGGCCGATTACAAT 2529411 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| ||| ||| | ||| | |||||| |||| || || ||| Sbjct 2529412 ATCCAAAAGGAAAGCACACTCCATCTCGTTTTGAGATTACGTGGTGGT 2529459 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || || || || ||||| | || | || |||||| | | Sbjct 2529460 ATGCAAATCTTTGTCAAGACATTGACGGGAAAAACTATTACCTTGGAGGTGGAATCATCT 2529519 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | ||||| || ||||| || || || ||||||||||| || ||| Sbjct 2529520 GATACAATCGATAACGTCAAAGCCAAGATTCAGGATAAAGAAGGTATTCCACCAGACCAA 2529579 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || ||||| ||||| || || || | ||||||||||| Sbjct 2529580 CAACGTTTGATCTTTGCTGGTAAACAATTAGAAGACGGACGTACATTGGCCGATTACAAC 2529639 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||||||| ||| | ||| | |||||||| ||||| || || Sbjct 2529640 ATTCAAAAAGAAAGCACTCTTCATCTCGTTTTGCGCTTGCGTGGCGG 2529686 >seq1 Length=6968282 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| ||||| | || |||||||| |||| || || || ||| | | | Sbjct 5661208 ATGCAAATTTTTGTAAAAACCCTTACGGGTAAAACAATCACCCTCGAGGTTGAATCAAAC 5661149 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| || | || ||| |||||||||||||| ||||||||||| || ||| Sbjct 5661148 GATACTATTGACAATGTTAAGGCAAAGATTCAAGACAAGGAAGGTATTCCACCAGACCAA 5661089 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || || || || || ||| || || | | ||||||||| Sbjct 5661088 CAACGTTTAATCTTTGCTGGTAAGCAATTGGAAGATGGGCGTACTTTGGCTGATTACAAC 5661029 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| ||||||||| | || || || ||||| | || || ||| Sbjct 5661028 ATCCAAAAGGAATCCACCTTGCACTTGGTCTTGCGTCTCCGTGGTGGT 5660981 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | || ||||| || |||| || ||||| |||| || Sbjct 6898029 ATGCAAATCTTTGTCAAGACACTTACTGGTAAGACAATCACACTAGAAGTCGAAAGCAGT 6898088 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || ||||| || || |||||||| || ||||||||||| || ||| Sbjct 6898089 GATACAATTGATAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGACCAA 6898148 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || || || || || || || ||||| | | || |||||| Sbjct 6898149 CAACGTCTCATTTTCGCTGGTAAGCAATTGGAAGACGGACGCACATTGGCTGACTACAAC 6898208 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || |||||||| |||||| ||||||| || ||||| | || || ||| Sbjct 6898209 ATCCAAAAAGAGTCCACCTTACATTTGGTATTGCGTCTCCGTGGTGGT 6898256 Score = 136 bits (150), Expect = 3e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| ||||| || || || || ||| |||| | ||||| ||| | || Sbjct 6898257 ATGCAAATCTTTGTCAAAACATTGACAGGAAAGACGATCACATTGGAAGTTGAATCTTCC 6898316 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || ||||| || ||||||||||| || ||||| || || || ||| Sbjct 6898317 GACACGATTGACAATGTCAAAGCCAAGATTCAAGACAAAGAAGGTATCCCGCCAGACCAA 6898376 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || ||||| || || || ||| || | | ||||||||| Sbjct 6898377 CAACGTTTGATCTTTGCAGGTAAACAATTGGAAGACGGCCGTACTTTGGCTGATTACAAC 6898436 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || ||||| ||||| ||| | || || || ||||| Sbjct 6898437 ATCCAAAAGGAATCTACCTTGCACTTGGTGTTGCG 6898471 Score = 134 bits (148), Expect = 1e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || || |||| || || || |||| || ||||| |||| || | Sbjct 6897801 ATGCAAATTTTTGTCAAGACACTAACAGGAAAGACAATCACACTAGAAGTCGAAAGCAGC 6897860 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | ||||| || || |||||||| || ||||| ||||| || ||| Sbjct 6897861 GACACTATTGAYAACGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 6897920 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || ||||| || || || ||||| | | ||||||||| Sbjct 6897921 CAACGTTTGATCTTTGCAGGTAAACAATTGGAAGACGGACGCACATTGGCTGATTACAAC 6897980 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| |||||||| || | || || || ||||| | || || ||| Sbjct 6897981 ATTCAGAAAGAATCTACACTCCACTTGGTCTTGCGCCTCCGTGGTGGT 6898028 Score = 96.9 bits (106), Expect = 3e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || ||||| || |||| ||||| ||||| | |||| || | ||| | |||| Sbjct 595350 ACAGGTAAGACCATCACCCTTGAGGTGGAGTCATCCGACACAATCGACAACGTCAAGGCT 595409 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || ||||||||||| || |||||||| || ||||||||| | || ||||| || || Sbjct 595410 AAGATCCAAGACAAGGAAGGAATTCCACCAGACCAACAACGTTTGATCTTTGCTGGAAAG 595469 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 || || || ||| | | || | | ||||||||||| ||||| ||||| || Sbjct 595470 CAATTGGAAGATGGCAGAACTTTGGCTGATTACAACATCCAAAAGGAATCTAC 595522 >seq2 Length=3834998 Score = 145 bits (160), Expect = 6e-30 Identities = 612/947 (65%), Gaps = 42/947 (4%) Strand=Plus/Plus Query 129133 ACTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAAC 129192 ||||| || || || || || || |||| ||| ||||| |||||| || ||||| Sbjct 3099603 ACTTGGAATTCTCCTGCTAACACACGCCTTGTGTAGATGTTTGAGGTGAAAGGTTCAAAG 3099662 Query 129193 GATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGC 129252 |||||||| ||||| |||||| || | || || |||||| |||| | ||| Sbjct 3099663 CATTCATTGAATCCTAAAATTTGACTGGTAGAAGCAGTAGGCATGGGTGCCAACAATAGC 3099722 Query 129253 GAGTTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGAT 129312 || || || |||||||||| | ||| | || ||||| || | ||||| ||| | ||| Sbjct 3099723 GAATTACGTAAACCGTGCTCTGCAATCTTTTCTTTTAGTTCAGACCAGTTCCATA--GAT 3099780 Query 129313 GTGGGTGTGTGA--TTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGAAA 129370 | |||| | ||||||| ||| ||||| ||| ||| ||| || || ||| Sbjct 3099781 CGGATGGTGTTACGTTCCACATGTCATATTGTAATTCTCCCTTACTTGCAGG---GGATC 3099837 Query 129371 A---GTAGGAATCGTGCACGCCGTAAGCTTTTGCCAATTCGCAACTCGCTTCCAATGCGC 129427 ||| | || | || | |||| |||||||||||||| ||||| || Sbjct 3099838 CCTCGTATGTTTCATATGTTCCTAATTCTTTAGCCAATTCGCAACTTCTCTCCAAAGCAG 3099897 Query 129428 CAAAATAAATTGTTTCGGCAATTTTGGTGTTCAACACTTTGGCCTGGT-CGCTT---TCG 129483 || || || ||||| |||| |||||| || || || | || | ||| Sbjct 3099898 CATGGTAGATCGTTTCAAAGATTTGAACGTTCAA----TTTGCGTGCTTCGGGTGAATCG 3099953 Query 129484 TACGGCATACGCAACATGGCAAATGTGTCGGCCAAACC-TTGAATACCCACACCGATGGG 129542 | ||||||| ||| || |||| || || | ||| |||| | || | |||||| || Sbjct 3099954 AAGGGCATACCCAAGATCATGAATGCATCTGCAAGACCGTTGACT-CCGATACCGATAGG 3100012 Query 129543 TCGATGTTTTCTATTGGATTTTTGTGC--CGACAACAAGGGATAGTAGTTGATGTCTATA 129600 || || | || ||| | |||| | | || || || || ||||| || ||| Sbjct 3100013 ACGGTGACGCATGTTAGATCTGCGTGCTTCTTCGACTGGG--TAATAATTGATATCAATA 3100070 Query 129601 ATTTTGTTTAAATTCTTGACCACA----ATTTTCGTTACGTATTTTAACATTTCAAAATT 129656 |||||||| || || |||||| | ||| | || | |||| | | |||| Sbjct 3100071 ATTTTGTTCAAGTT----ACCACAGATCACTTTGGCAACTGCGTGTAACTTCTTGAAATC 3100126 Query 129657 GTACTCGCCTACATCGATGTCGACAAATT-GATTGACACA--AATCGAGGCCAAATTGCA 129713 || | || | | | | ||| | | ||| || | |||||| ||||||||||| Sbjct 3100127 ATAA--GTCTTTGTTGCAGG-GTCAACGTAGGTTGGCAAAGCAATCGAAGCCAAATTGCA 3100183 Query 129714 GACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTT 129773 |||||| ||| | ||| ||| || | |||||| | |||||| ||| || || Sbjct 3100184 CACGGCAACTTCATCAGGTGCACAGTATTCAATAATTTCTGTGCACAAGTTAGAGTTCTT 3100243 Query 129774 AATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTA 129833 ||||| ||||||| |||||| |||||||| |||| ||||||||||||| |||| | Sbjct 3100244 GATGGTACCCAAATTCTTTTGGTTACTTTTTCTGTTTGCTGCATCTTTGTACAACATGAA 3100303 Query 129834 CGGCGTGCCCGTTTCGACTTGCGTTTCGACAATGGTCCTGAACAAGTCTCGAGCCTTGAT 129893 || | || ||||| ||| | ||| | ||| | |||| | | | || ||||| Sbjct 3100304 TGGGTTACCAGTTTCAGTTTGAGATTCAAGAATAGCATACCACAACTTTTGTGCTTTGAT 3100363 Query 129894 CTGTCTTACAAATTTGCCACATTTCTCGTATGCCACATACAGTTGTTCAAATTCTGAGCC 129953 || ||||| || |||| || ||||| | | | || |||| |||||||||| || Sbjct 3100364 CTTCTTTACATATCTGCCTTGCTTTTCGTAAGACTCGTAAAGTTTTTCAAATTCTTCACC 3100423 Query 129954 GTGTACGGT--GTCGAGCAACGGCGATTCACGCGGACACATCAAACTCCACATTCCATCC 130011 || || | | | | | | || ||||| || |||||||| | ||| |||| Sbjct 3100424 GT-AACAATCAGCCAAACCA-GGGGATTCGTTGGGGCACATCAAGCACCATTCACCATTT 3100481 Query 130012 GCTTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAA 130058 ||| || || ||||| ||||| || || | ||| || || || || Sbjct 3100482 TGTTCAACACGCTTCATGAACAAGTCTGGAATCCATAGAGCATAGAA 3100528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727703304770