Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1 170 4e-37 seq3 159 6e-34 >seq1 Length=6968282 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| |||||||| | ||||| || ||||||||||| ||||| | Sbjct 5660982 CCACCACGGAGACGCAAGACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAATCAGCC 5661041 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||||||| || ||||| || || || || | | ||||||||| |||||| Sbjct 5661042 AAAGTACGCCCATCTTCCAATTGCTTACCAGCAAAGATTAAACGTTGTTGGTCTGGTGGA 5661101 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||||||||||||||||||||| || || || || || |||||| || Sbjct 5661102 ATACCTTCCTTGTCTTGAATCTTTGCCTTAACATTGTCAATAGTATCGTTTGATTCAACC 5661161 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| ||||| ||||| ||||| || || || || ||||| Sbjct 5661162 TCGAGGGTGATTGTTTTACCCGTAAGGGTTTTTACAAAAATTTGCAT 5661208 Score = 165 bits (182), Expect = 2e-35 Identities = 175/229 (76%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||||||||| |||| |||||||||||||||||||| || || | Sbjct 6898255 CCACCACGGAGACGCAATACCAAATGTAAGGTGGACTCTTTTTGGATGTTGTAGTCAGCC 6898196 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | ||| | || ||||| || ||||| || ||||| ||||| | ||||||||| |||||| Sbjct 6898195 AATGTGCGTCCGTCTTCCAATTGCTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGA 6898136 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGT--CTGCTGATTCTA 68412 || ||||| |||||||| ||||| || ||||| || || || | ||||| ||| | Sbjct 6898135 ATACCTTCTTTGTCTTGGATCTTGGCTTTGACATTATCAATTGTATCACTGCT--TTCGA 6898078 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| | ||||| || || || || || |||||||| || || ||||| Sbjct 6898077 CTTCTAGTGTGATTGTCTTACCAGTAAGTGTCTTGACAAAGATTTGCAT 6898029 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| |||||||| || |||||||| ||||||||||| || || | Sbjct 6897799 CCACCACGGAGACGCAACACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGCC 6897740 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || ||||| || ||||| ||||| || || | |||||||||||| ||||| Sbjct 6897739 AAAGTGCGACCGTCTTCCAATTGCTTACCGGCAAAGATCAATCTTTGTTGGTCTGGTGGG 6897680 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| |||||||| ||||| || ||||| || || || || | ||||| || Sbjct 6897679 ATACCTTCTTTGTCTTGGATCTTGGCTTTGACATTGTCAATAGTATCAGAGGATTCAACC 6897620 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| || || || || || | ||||||||| || || ||||| Sbjct 6897619 TCAAGGGTAATTGTCTTACCAGTCAAGGTCTTGACAAAGATTTGCAT 6897573 Score = 150 bits (166), Expect = 3e-31 Identities = 173/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 68229 TAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAA 68288 || ||||| || ||||| ||||| |||||||| | || || || ||||||||||| ||| Sbjct 6898489 TAGTTTCCACCACGAAGACGCAACACCAAGTGCAAGGTAGATTCCTTTTGGATGTTGTAA 6898430 Query 68289 TCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCG 68348 || | | || | || ||||| || || || || || || || | | ||||||||| Sbjct 6898429 TCAGCCAAAGTACGGCCGTCTTCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCT 6898370 Query 68349 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT 68408 || || || ||||| |||||||||||||| || ||||| || || ||||| | ||| Sbjct 6898369 GGCGGGATACCTTCTTTGTCTTGAATCTTGGCTTTGACATTGTCAATCGTGTCGGAAGAT 6898310 Query 68409 TCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||||||| ||||| || ||||| || | || ||||| || || ||||| Sbjct 6898309 TCAACTTCCAATGTGATCGTCTTTCCTGTCAATGTTTTGACAAAGATTTGCAT 6898257 Score = 145 bits (160), Expect = 1e-29 Identities = 143/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| | || || || ||||||||||| ||||| | | || || |||||||| Sbjct 595534 ACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAATCAGCCAAAGTTCTGCCATCTTCC 595475 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 || ||||| || || || || | | ||||||||| |||||||| |||||||||||||| Sbjct 595474 AATTGCTTTCCAGCAAAGATCAAACGTTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGG 595415 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||||||| ||||| ||||| | ||| || || || | ||||||||| || Sbjct 595414 ATCTTAGCCTTGACGTTGTCGATTGTGTCGGATGACTCCACCTCAAGGGTGATGGTCTTA 595355 Query 68433 CCCGT 68437 || || Sbjct 595354 CCTGT 595350 >seq3 Length=3165745 Score = 159 bits (176), Expect = 6e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || || | |||||| || | || || ||| |||||||| ||||| ||||||| Sbjct 2529687 TCCGCCACGCAAGCGCAAAACGAGATGAAGAGTGCTTTCTTTTTGAATGTTGTAATCGGC 2529628 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 | ||| | || |||||||| || || || || || || | | ||||||||| ||||| Sbjct 2529627 CAATGTACGTCCGTCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGTGG 2529568 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||| ||||| || || |||||||| || |||||| ||||| || || | |||||| || Sbjct 2529567 AATACCTTCTTTATCCTGAATCTTGGCTTTGACGTTATCGATTGTATCAGATGATTCCAC 2529508 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||| || ||||||||||| | |||||||| || || ||||| Sbjct 2529507 CTCCAAGGTAATAGTTTTTCCCGTCAATGTCTTGACAAAGATTTGCAT 2529460 Score = 141 bits (156), Expect = 2e-28 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 68271 TCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAAT 68330 || |||||||| || ||||||| | ||| | |||||||| || ||||| || || || Sbjct 2529422 TCCTTTTGGATATTGTAATCGGCCAATGTACGACCATCTTCCAATTGCTTACCAGCAAAG 2529363 Query 68331 ATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCC 68390 || || | |||||| || |||||||| ||||| |||||||||||||| ||||||||| Sbjct 2529362 ATAAGACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGAATCTTGGCCTTGACGTTG 2529303 Query 68391 TCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACG 68450 || ||||| || | ||||| || ||||| ||||| || ||||| || | || || || Sbjct 2529302 TCAATGGTATCCGAAGATTCAACCTCCAAAGTGATCGTCTTTCCGGTCAAAGTTTTTACA 2529243 Query 68451 AATATCTGCAT 68461 || || ||||| Sbjct 2529242 AAGATTTGCAT 2529232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621731823760