Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq3 154 1e-32 seq1 145 6e-30 >seq3 Length=3165745 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||||| ||||||||| | ||| | || ||| ||||| || ||||||||| Sbjct 2529461 ATACCACCACGTAATCTCAAAACGAGATGGAGTGTGCTTTCCTTTTGGATATTGTAATCG 2529402 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| |||||| | ||| |||||||| |||| ||||| ||||| || || Sbjct 2529401 GCCAATGTACGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGTTGATCTGGT 2529342 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| |||||| || | | |||| ||| || | ||||| Sbjct 2529341 GGAATACCTTCTTTGTCTTGAATCTTGGCCTTGACGTTGTCAATGGTATCCGAAGATTCA 2529282 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||| || ||||||| |||||||||||| || ||||| Sbjct 2529281 ACCTCCAAAGTGATCGTCTTTCCGGTCAAAGTTTTTACAAAGATTTGCAT 2529232 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 |||||||| | | |||||| | ||| | || |||||||||||||||||||||| | Sbjct 2529686 CCGCCACGCAAGCGCAAAACGAGATGAAGAGTGCTTTCTTTTTGAATGTTGTAATCGGCC 2529627 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | ||||| ||||| | |||||||||||| |||| | ||| |||||||| || ||| Sbjct 2529626 AATGTACGTCCGTCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGTGGA 2529567 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || |||||||| || |||||| ||| | | || | || || | ||||| || Sbjct 2529566 ATACCTTCTTTATCCTGAATCTTGGCTTTGACGTTATCGATTGTATCAGATGATTCCACC 2529507 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| ||| | ||||| || |||| || || ||||| || ||||| Sbjct 2529506 TCCAAGGTAATAGTTTTTCCCGTCAATGTCTTGACAAAGATTTGCAT 2529460 >seq1 Length=6968282 Score = 145 bits (160), Expect = 6e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | ||| || || || | || ||||| ||||| ||||||||||| Sbjct 5660981 ACCACCACGGAGACGCAAGACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAATCAGC 5661040 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| | ||| |||||||| |||| | ||| |||||||| || || Sbjct 5661041 CAAAGTACGCCCATCTTCCAATTGCTTACCAGCAAAGATTAAACGTTGTTGGTCTGGTGG 5661100 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| ||||| ||||||| || | | |||| || ||| | ||||| || Sbjct 5661101 AATACCTTCCTTGTCTTGAATCTTTGCCTTAACATTGTCAATAGTATCGTTTGATTCAAC 5661160 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 114384 || | ||| | ||||| || || || |||||||||||||| ||||||| Sbjct 5661161 CTCGAGGGTGATTGTTTTACCCGTAAGGGTTTTTACAAAAATTTGCATGG 5661210 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | ||| || || || | |||||||| ||||| ||||||||||| | Sbjct 6898483 CCACCACGAAGACGCAACACCAAGTGCAAGGTAGATTCCTTTTGGATGTTGTAATCAGCC 6898424 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | |||||| ||||| | ||||||||| || |||| | ||| |||||||| || || Sbjct 6898423 AAAGTACGGCCGTCTTCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCTGGCGGG 6898364 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || ||||||||||| |||||| ||| | | |||| ||||||| ||||| || Sbjct 6898363 ATACCTTCTTTGTCTTGAATCTTGGCTTTGACATTGTCAATCGTGTCGGAAGATTCAACT 6898304 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| || | ||| || || |||| ||||| ||||| || ||||| Sbjct 6898303 TCCAATGTGATCGTCTTTCCTGTCAATGTTTTGACAAAGATTTGCAT 6898257 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | ||| || || || | ||||||||||| |||||||||||||| Sbjct 6898030 ATACCACCACGGAGGCGCAAGACCAAGTGGAGTGTAGATTCTTTCTGAATGTTGTAATCA 6897971 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| | ||||||||| || |||| | ||| |||||||| || Sbjct 6897970 GCCAATGTGCGTCCGTCTTCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCTGGT 6897911 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||||||||| ||||| ||| | | |||| |||||| || |||| Sbjct 6897910 GGGATACCTTCTTTGTCTTGGATCTTGGCTTTGACGTTRTCAATAGTGTCGCTGCTTTCG 6897851 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || || || || || || |||||||| ||||| Sbjct 6897850 ACTTCTAGTGTGATTGTCTTTCCTGTTAGTGTCTTGACAAAAATTTGCAT 6897801 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | ||| || ||||||| || || |||||||| |||||||| || Sbjct 6898258 ATACCACCACGGAGACGCAATACCAAATGTAAGGTGGACTCTTTTTGGATGTTGTAGTCA 6898199 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| | ||| ||||||||| | |||||||| |||||||| || Sbjct 6898198 GCCAATGTGCGTCCGTCTTCCAATTGCTTACCAGCGAAAATGAGACGTTGTTGGTCTGGT 6898139 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| ||||| ||| | | |||| || || || |||| Sbjct 6898138 GGAATACCTTCTTTGTCTTGGATCTTGGCTTTGACATTATCAATTGTATCACTGCTTTCG 6898079 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || || || || || || ||||| || ||||| Sbjct 6898078 ACTTCTAGTGTGATTGTCTTACCAGTAAGTGTCTTGACAAAGATTTGCAT 6898029 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | ||| || || || | || || || ||||| |||||||| || Sbjct 6897802 ATACCACCACGGAGACGCAACACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCA 6897743 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| ||| ||||| | ||| ||||| || |||| | | |||||||| || Sbjct 6897742 GCCAAAGTGCGACCGTCTTCCAATTGCTTACCGGCAAAGATCAATCTTTGTTGGTCTGGT 6897683 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||||||||| ||||| ||| | | |||| || || | |||||| Sbjct 6897682 GGGATACCTTCTTTGTCTTGGATCTTGGCTTTGACATTGTCAATAGTATCAGAGGATTCA 6897623 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || || || |||| || || ||||| || ||||| Sbjct 6897622 ACCTCAAGGGTAATTGTCTTACCAGTCAAGGTCTTGACAAAGATTTGCAT 6897573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420134103017496