Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1 127 2e-24 seq3 95.1 1e-14 >seq1 Length=6968282 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||| ||||| ||||| ||| |||||||| || ||||||||||||| ||| ||| | Sbjct 5660993 ACGCAAGACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAATCAGCCAAAGTACGCCC 5661052 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || | ||||||||||| || || | || || ||||| | ||| | | ||||| Sbjct 5661053 ATCTTCCAATTGCTTACCAGCAAAGATTAAACGTTGTTGGTCTGGTGGAATACCTTCCTT 5661112 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 || | ||| | |||| | | | | | | | || ||| | ||||| || |||| |||| Sbjct 5661113 GT-CTTGAATCTTTGCCTTAACATTGTCAATAGTATCGTTTGATTCAACCTCGAGGGTGA 5661171 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | ||||| ||||| || || |||||||| |||||||| Sbjct 5661172 TTGTTTTACCCGTAAGGGTTTTTACAAAAATTTGCAT 5661208 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||| |||||||| || ||| ||| ||||| || ||||| ||||||| || || | Sbjct 6898244 ACGCAATACCAAATGTAAGGTGGACTCTTTTTGGATGTTGTAGTCAGCCAATGTGCGTCC 6898185 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || | |||||||||||||| ||||| || || ||||| | ||| | | || || Sbjct 6898184 GTCTTCCAATTGCTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGAATACCTTCTTT 6898125 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| ||| || ||||| | | | || || || ||| || || | ||||| Sbjct 6898124 GTCTTGGATCTTGGCTTTGACATTATCAATTGTATCACTGCTTTCGACTTCTAGTGTGAT 6898065 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || || || ||||| |||||||||||||| Sbjct 6898064 TGTCTTACCAGTAAGTGTCTTGACAAAGATTTGCAT 6898029 Score = 96.9 bits (106), Expect = 4e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||||||||| ||||| || |||||||| || ||||||||||||| ||| || | Sbjct 6898472 ACGCAACACCAAGTGCAAGGTAGATTCCTTTTGGATGTTGTAATCAGCCAAAGTACGGCC 6898413 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || | || ||||| || || || | || || ||||| | || | | || || Sbjct 6898412 GTCTTCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCTGGCGGGATACCTTCTTT 6898353 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 || | ||| | || | ||||| | | | ||||||| ||||| || || | |||| Sbjct 6898352 GT-CTTGAATCTTGGCTTTGACATTGTCAATCGTGTCGGAAGATTCAACTTCCAATGTGA 6898294 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || || || | || || |||||||||||||| Sbjct 6898293 TCGTCTTTCCTGTCAATGTTTTGACAAAGATTTGCAT 6898257 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||||||||| || | |||| ||||||||| || ||||| ||||||| ||| || | Sbjct 6897788 ACGCAACACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGCCAAAGTGCGACC 6897729 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || | |||||||| || || || | || || ||||| | ||| | | || || Sbjct 6897728 GTCTTCCAATTGCTTACCGGCAAAGATCAATCTTTGTTGGTCTGGTGGGATACCTTCTTT 6897669 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| ||| || ||||| | | | || || ||||| || || | || || Sbjct 6897668 GTCTTGGATCTTGGCTTTGACATTGTCAATAGTATCAGAGGATTCAACCTCAAGGGTAAT 6897609 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || || | ||||| |||||||||||||| Sbjct 6897608 TGTCTTACCAGTCAAGGTCTTGACAAAGATTTGCAT 6897573 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 ||||| ||||| || | ||| || || ||||| ||||||||||||| || || || Sbjct 6898015 CGCAAGACCAAGTGGAGTGTAGATTCTTTCTGAATGTTGTAATCAGCCAATGTGCGTCCG 6897956 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || | || ||||| || || || | || || ||||| | ||| | | || ||| Sbjct 6897955 TCTTCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTG 6897896 Query 42114 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 || ||| || ||||| ||| | | |||||||| ||| || || | ||||| Sbjct 6897895 TCTTGGATCTTGGCTTTGA-CGTTRTCAATAGTGTCGCTGCTTTCGACTTCTAGTGTGAT 6897837 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || ||||| ||||| ||||| |||||||| Sbjct 6897836 TGTCTTTCCTGTTAGTGTCTTGACAAAAATTTGCAT 6897801 >seq3 Length=3165745 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41991 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 42050 || ||||| || | ||| | ||||| || |||||||| |||||||| |||| || || Sbjct 2529677 AAGCGCAAAACGAGATGAAGAGTGCTTTCTTTTTGAATGTTGTAATCGGCCAATGTACGT 2529618 Query 42051 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCC 42110 |||| |||| || |||||||| || || | || || ||||| | ||| | | || Sbjct 2529617 CCGTCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGTGGAATACCTTCT 2529558 Query 42111 TTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGT 42169 || ||| ||| | || | ||||| | | | || || |||||||| || | || Sbjct 2529557 TTATCC-TGAATCTTGGCTTTGACGTTATCGATTGTATCAGATGATTCCACCTCCAAGGT 2529499 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || ||||| ||||| | ||||| |||||||||||||| Sbjct 2529498 AATAGTTTTTCCCGTCAATGTCTTGACAAAGATTTGCAT 2529460 Score = 89.7 bits (98), Expect = 6e-13 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || | ||| | ||| || | ||| | |||||| |||||||| ||||||||||| || Sbjct 2529459 ACCACCACGTAATCTCAAAACGAGATGGAGTGTGCTTTCCTTTTGGATATTGTAATCGGC 2529400 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || | ||||||||||| || || || || || || || | ||| Sbjct 2529399 CAATGTACGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGTTGATCTGGTGG 2529340 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 42158 | | || |||| | ||| | || | |||| ||| | | | || || ||||| Sbjct 2529339 AATACCTTCTTTGT-CTTGAATCTTGGCCTTGA-CGTTGTCAATGGTATCCGAAGATTCA 2529282 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | ||||| || || || || | || ||||||||||||||||| Sbjct 2529281 ACCTCCAAAGTGATCGTCTTTCCGGTCAAAGTTTTTACAAAGATTTGCAT 2529232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212406170720