Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq3 100 3e-16 seq1 89.7 5e-13 >seq3 Length=3165745 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || ||||| | || ||||| | || ||| ||||| || |||||||| || Sbjct 2529459 ACCACCACGTAATCTCAAAACGAGATGGAGTGTGCTTTCCTTTTGGATATTGTAATCGGC 2529400 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| | ||||| || ||| | || || || || || || || || Sbjct 2529399 CAATGTACGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGTTGATCTGGTGG 2529340 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| |||||||| ||||| || || ||| || || | ||||| | || || Sbjct 2529339 AATACCTTCTTTGTCTTGAATCTTGGCCTTGACGTTGTCAATGGTATCCGAAGATTCAAC 2529280 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | ||||| ||||||||||||||||| || |||||||| Sbjct 2529279 CTCCAAAGTGATCGTCTTTCCGGTCAAAGTTTTTACAAAGATTTGCAT 2529232 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| ||||| | | || ||||||| || ||||||||||||||||||||| || Sbjct 2529686 CCGCCACGCAAGCGCAAAACGAGATGAAGAGTGCTTTCTTTTTGAATGTTGTAATCGGCC 2529627 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || ||||||| | || || || ||| | || | || || ||||| || ||| Sbjct 2529626 AATGTACGTCCGTCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGTGGA 2529567 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 || |||||||| || || | | || ||||| || || | ||||||| | ||||| Sbjct 2529566 ATACCTTCTTTATCCTG-AATCTTGGCTTTGACGTTATCGATTGTATCAGATGATTCCAC 2529508 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | || || || ||||| || || || || |||||||| Sbjct 2529507 CTCCAAGGTAATAGTTTTTCCCGTCAATGTCTTGACAAAGATTTGCAT 2529460 >seq1 Length=6968282 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| ||||| ||||||||||| || | || ||| | ||||| | ||||| || Sbjct 5661012 GTGGATTCCTTTTGGATGTTGTAATCAGCCAAAGTACGCCCATCTTCCAATTGCTTACCA 5661071 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | || || ||||| || ||||| ||||| || ||||| || ||| ||| Sbjct 5661072 GCAAAGATTAAACGTTGTTGGTCTGGTGGAATACCTTCCTTGTCTTGAATCTTTGCCTTA 5661131 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | ||||| | || || || | || | || || || || | ||| Sbjct 5661132 ACATTGTCAATAGTATCGTTTGATTCAACCTCGAGGGTGATTGTTTTACCCGTAAGGGTT 5661191 Query 64427 TTTACGAAAATTTGCAT 64443 ||||| ||||||||||| Sbjct 5661192 TTTACAAAAATTTGCAT 5661208 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || |||||||| |||||||||||||| || | ||||| ||||||| | || || || Sbjct 6897997 GTAGATTCTTTCTGAATGTTGTAATCAGCCAATGTGCGTCCGTCTTCCAATTGTTTACCT 6897938 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | || || ||||| || || || |||||||| ||||| | | || ||||| Sbjct 6897937 GCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGGA-TCTTGGCTTT 6897879 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 || || | || || | | || ||||||| || | ||||| || || | || Sbjct 6897878 GACGTTRTCAATAGTGTCGCTGCTTTCGACTTCTAGTGTGATTGTCTTTCCTGTTAGTGT 6897819 Query 64426 TTTTACGAAAATTTGCAT 64443 || || ||||||||||| Sbjct 6897818 CTTGACAAAAATTTGCAT 6897801 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| ||||| ||||||||||| || | || || ||||||| | || || || Sbjct 6898453 GTAGATTCCTTTTGGATGTTGTAATCAGCCAAAGTACGGCCGTCTTCCAATTGTTTACCT 6898394 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | || || ||||| || || || |||||||| ||||| | | || ||||| Sbjct 6898393 GCAAAGATCAAACGTTGTTGGTCTGGCGGGATACCTTCTTTGTCTTG-AATCTTGGCTTT 6898335 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | || || | || ||||| | || | ||||| || ||||| || Sbjct 6898334 GACATTGTCAATCGTGTCGGAAGATTCAACTTCCAATGTGATCGTCTTTCCTGTCAATGT 6898275 Query 64426 TTTTACGAAAATTTGCAT 64443 ||| || || |||||||| Sbjct 6898274 TTTGACAAAGATTTGCAT 6898257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644437757520