Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1 134 1e-26 seq3 131 1e-25 >seq1 Length=6968282 Score = 134 bits (148), Expect = 1e-26 Identities = 159/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || || || | ||| || || ||||| ||||||||||| | | | | | | ||| Sbjct 5660997 AAGACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAATCAGCCAAAGTACGCCCATCT 5661056 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || ||||| || ||||| | || ||||| |||||||| |||||| ||||||||||| Sbjct 5661057 TCCAATTGCTTACCAGCAAAGATTAAACGTTGTTGGTCTGGTGGAATACCTTCCTTGTCT 5661116 Query 15085 CAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 ||| ||||| || ||| | || ||||||||| | ||| || || | ||| || || Sbjct 5661117 TGAATCTTTGC-CTTAACATTGTCAATAGTATCGTTTGATTCAACCTCGAGGGTGATTGT 5661175 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||||| || || |||||||||||||||||||| Sbjct 5661176 TTTACCCGTAAGGGTTTTTACAAAAATTTGCAT 5661208 Score = 122 bits (134), Expect = 6e-23 Identities = 157/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGT 15022 || || || || || ||||| ||||| || ||||||||||| | ||| || ||| Sbjct 6898012 AAGACCAAGTGGAGTGTAGATTCTTTCTGAATGTTGTAATCA--GCCAATGTGCGTCCGT 6897955 Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082 |||| |||||||| || || | |||||||| |||||||| ||| || ||||| |||| Sbjct 6897954 CTTCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGT 6897895 Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGG 15142 | || ||| ||| || | || ||||| ||||| |||| || |||| || || | Sbjct 6897894 CTTGGATCTTGGCTTTGACGTTRTCAATAGTGTCGCTGCTTTCGACTTCTAGTGTGATTG 6897835 Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || ||||| || || || ||||||||||||||| Sbjct 6897834 TCTTTCCTGTTAGTGTCTTGACAAAAATTTGCATA 6897800 Score = 114 bits (126), Expect = 9e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || || || | |||||| || ||||| ||||||||||| | | | | ||||| Sbjct 6898468 AACACCAAGTGCAAGGTAGATTCCTTTTGGATGTTGTAATCAGCCAAAGTACGGCCGTCT 6898409 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || |||||||| || || | |||||||| |||||||| || || ||||| ||||| Sbjct 6898408 TCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCTGGCGGGATACCTTCTTTGTCT 6898349 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||| ||| ||| ||| | || || || ||| | ||| || || || || || || Sbjct 6898348 TGAATCTTGGCTTTGACATTGTCAATCGTGTCGGAAGATTCAACTTCCAATGTGATCGTC 6898289 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || ||||||| ||||| ||||| ||||||||| Sbjct 6898288 TTTCCTGTCAATGTTTTGACAAAGATTTGCATA 6898256 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 14980 GTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15039 ||||| || ||||| ||||||||||| | | |||| | ||||| ||||| || ||| Sbjct 595522 GTAGATTCCTTTTGGATGTTGTAATCAGCCAAAGTTCTGCCATCTTCCAATTGCTTTCCA 595463 Query 15040 GCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC 15083 || | |||||||| |||||||| |||||||||||||||||| Sbjct 595462 GCAAAGATCAAACGTTGTTGGTCTGGTGGAATTCCTTCCTTGTC 595419 >seq3 Length=3165745 Score = 131 bits (144), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || ||||| | ||||| | |||||| || |||||||| |||||||||||| | Sbjct 2529686 CCGCCACGCAAGCGCAAAACGAGATGAAGAGTGCTTTCTTTTTGAATGTTGTAATCG--G 2529629 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| || |||||||||||||||| ||||| | |||||||| |||||||| || Sbjct 2529628 CCAATGTACGTCCGTCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGTG 2529569 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||| || || ||| ||| ||| || | || || ||||| ||| | Sbjct 2529568 GAATACCTTCTTTATCCTGAATCTTGGCTTTGACGTTATCGATTGTATCAGATGATTCCA 2529509 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || |||||||| ||||| || |||| || || ||||| ||||||||| Sbjct 2529508 CCTCCAAGGTAATAGTTTTTCCCGTCAATGTCTTGACAAAGATTTGCATA 2529459 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || ||||| ||||| | ||| || || || ||||| || ||||||||| | Sbjct 2529458 CCACCACGTAATCTCAAAACGAGATGGAGTGTGCTTTCCTTTTGGATATTGTAATCG--G 2529401 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| || | ||||| ||||| || ||||| | || | ||| ||||| || || Sbjct 2529400 CCAATGTACGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGTTGATCTGGTG 2529341 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||| ||||| ||| ||| || || | || || ||||| | ||| | Sbjct 2529340 GAATACCTTCTTTGTCTTGAATCTTGGCCTTGACGTTGTCAATGGTATCCGAAGATTCAA 2529281 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || || || || || || || |||| |||||||||||| ||||||||| Sbjct 2529280 CCTCCAAAGTGATCGTCTTTCCGGTCAAAGTTTTTACAAAGATTTGCATA 2529231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357391747368530