Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 9e-16 seq1 86.0 6e-12 >seq3 Length=3165745 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| ||||||| ||| || | ||| | || || ||||| |||||||||||| || Sbjct 2529458 CCACCACGTAATCTCAAAACGAGATGGAGTGTGCTTTCCTTTTGGATATTGTAATCGGCC 2529399 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || | || || ||||| |||| | || || ||||| || || Sbjct 2529398 AATGTACGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGTTGATCTGGTGGA 2529339 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || ||||| || || ||||| ||||| | | ||| |||| | || || Sbjct 2529338 ATACCTTCTTTGTCTTGAATCTTGGCCTTGACGTTGT-CAATGGTATCCGAAGATTCAAC 2529280 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||| || ||||||| |||||||||||| || ||||| Sbjct 2529279 CTCCAAAGTGATCGTCTTTCCGGTCAAAGTTTTTACAAAGATTTGCAT 2529232 >seq1 Length=6968282 Score = 86.0 bits (94), Expect = 6e-12 Identities = 161/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 126883 TGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATC 126942 ||| ||||| || | ||||| ||||| || | || || || ||||| || |||||||| Sbjct 5660978 TGCACCACCACGGAGACGCAAGACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAATC 5661037 Query 126943 GCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGG 127002 ||| || || ||| || | || || ||||| |||| || || || || || || Sbjct 5661038 AGCCAAAGTACGCCCATCTTCCAATTGCTTACCAGCAAAGATTAAACGTTGTTGGTCTGG 5661097 Query 127003 AGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCT 127061 || || || |||||||| ||| | | ||| || | | || | || || | | Sbjct 5661098 TGGAATACCTTCCTTGTCT-TGAATCTTTGCCTTAACATTGTCAATAGTATCGTTTGATT 5661156 Query 127062 CGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 | || |||| ||| | ||||| || || || |||||||||||||| ||||||| Sbjct 5661157 CAACCTCGAGGGTGATTGTTTTACCCGTAAGGGTTTTTACAAAAATTTGCATGG 5661210 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | ||||||||||| || | ||||| || ||||| || |||||||| | Sbjct 6898484 TCCACCACGAAGACGCAACACCAAGTGCAAGGTAGATTCCTTTTGGATGTTGTAATCAGC 6898425 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || || || || | ||||| || || ||||||| || || || || || || Sbjct 6898424 CAAAGTACGGCCGTCTTCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCTGGCGG 6898365 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 || || || |||| | ||| | | || |||| | || | ||||| | | || | Sbjct 6898364 GATACCTTCTTTGT-CTTGAATCTTGGCTTTGACATTGTCAATCGTGTCGGAAGATTCAA 6898306 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | ||| || || |||| ||||| ||||| || ||||| Sbjct 6898305 CTTCCAATGTGATCGTCTTTCCTGTCAATGTTTTGACAAAGATTTGCAT 6898257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500455261920