Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1 125 6e-24 seq2 123 2e-23 seq3 122 8e-23 >seq1 Length=6968282 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 |||| || || || | |||||| | |||| || |||||||||||||| || ||||| Sbjct 6898485 TTCCACCACGAAGACGCAACACCAAGTGCAAGGTAGATTCCTTTTGGATGTTGTAATCAG 6898426 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | || || ||||||||||| ||||| | ||||| ||||| ||||| |||| Sbjct 6898425 CCAAAGTACGGCCGTCTTCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCTGGCG 6898366 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 | || |||||||| |||||||| || ||||| || | ||||||||||| || | Sbjct 6898365 GGATACCTTCTTTGTCTTGAATCTTGGCTTTGACATTGTCAATCGTGTCGGAAGATTCAA 6898306 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| | || | ||| || || || | ||||| ||||| |||||||| Sbjct 6898305 CTTCCAATGTGATCGTCTTTCCTGTCAATGTTTTGACAAAGATTTGCAT 6898257 Score = 104 bits (114), Expect = 2e-17 Identities = 166/237 (70%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | ||| || | |||| || |||||||||||||| || ||||| Sbjct 5660982 CCACCACGGAGACGCAAGACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAATCAGCC 5661041 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || ||| |||||||| || || || | || || ||||| ||||| || ||| Sbjct 5661042 AAAGTACGCCCATCTTCCAATTGCTTACCAGCAAAGATTAAACGTTGTTGGTCTGGTGGA 5661101 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| || |||||||| ||| || | || | || ||| || || || Sbjct 5661102 ATACCTTCCTTGTCTTGAATCTTTGCCTTAACATTGTCAATAGTATCGTTTGATTCAACC 5661161 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCG-CGCGACC 45349 ||||| || | ||||| || || || |||||||||||||||||||| | |||||| Sbjct 5661162 TCGAGGGTGATTGTTTTACCCGTAAGGGTTTTTACAAAAATTTGCATGGTGGCGACC 5661218 Score = 96.9 bits (106), Expect = 3e-15 Identities = 165/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC- 45169 || || || ||||| | ||| || | || || || ||||| || || || || ||||| Sbjct 6898030 ATACCACCACGGAGGCGCAAGACCAAGTGGAGTGTAGATTCTTTCTGAATGTTGTAATCA 6897971 Query 45170 GCTGACG-GTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 || | | | | | || ||||||||||| ||||| | ||||| ||||| ||||| | Sbjct 6897970 GCCAATGTGCGTCCG--TCTTCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCTG 6897913 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287 | || || |||||||| ||||| || || ||||| || | || | |||||| Sbjct 6897912 GTGGGATACCTTCTTTGTCTTGGATCTTGGCTTTGA-CGTTRTCAATAGTGTCGCTGCTT 6897854 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| || || | || || || ||||| || || |||||||||||||| Sbjct 6897853 TCGACTTCTAGTGTGATTGTCTTTCCTGTTAGTGTCTTGACAAAAATTTGCAT 6897801 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 |||| || |||||||||||||| || ||||| | ||| | ||| |||||||| Sbjct 595528 TGCAAAGTAGATTCCTTTTGGATGTTGTAATCAGCCAAAGTTCTGCCATCTTCCAATTGC 595469 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| || | ||||| ||||| ||||| || ||||| ||||| || ||||| || || Sbjct 595468 TTTCCAGCAAAGATCAAACGTTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTA 595409 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGT 45301 |||| || | || | |||||||| ||||| || || || || Sbjct 595408 GCCTTGA-CGTTGTCGATTGTGTCGGATGACTCCACCTCAAGGGT 595365 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | |||||| | || || || || ||||||||||| || || || Sbjct 6897802 ATACCACCACGGAGACGCAACACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCA 6897743 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | || |||||||| || || || | ||||||| ||| ||||| || Sbjct 6897742 GCCAAAGTGCGACCGTCTTCCAATTGCTTACCGGCAAAGATCAATCTTTGTTGGTCTGGT 6897683 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||| ||||| || || ||||| || | || || || || || Sbjct 6897682 GGGATACCTTCTTTGTCTTGGATCTTGGCTTTGACATTGTCAATAGTATCAGAGGATTCA 6897623 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || |||| || || || || | || || ||||| ||||||||| Sbjct 6897622 ACCTCAAGGGTAATTGTCTTACCAGTCAAGGTCTTGACAAAGATTTGCATC 6897572 >seq2 Length=3834998 Score = 123 bits (136), Expect = 2e-23 Identities = 482/745 (65%), Gaps = 26/745 (3%) Strand=Plus/Minus Query 123587 TATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAA 123646 |||| | ||| | ||| ||||| || | || | |||| | |||||||| || || Sbjct 3100337 TATTCTTGAATCTCAAACTGAAACTGGTAACCCATTCATGTTGTACAAAGATGCAGCAAA 3100278 Query 123647 CAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAAT 123706 ||| |||| || || | || ||||| || || || ||| | ||| | ||||| Sbjct 3100277 CAGAAAAAGTAACCAAAAGAATTTGGGTACCATCAAGAACTCTAACTTGTGCACAGAAAT 3100218 Query 123707 TATCGAATACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTG-- 123764 ||| |||||| | | | ||| |||| |||||||| ||||||||||||||| || Sbjct 3100217 TATTGAATACTGTGCACCTGATGAAGTTGCCGTGTGCAATTTGGCTTCGATTGCTTTGCC 3100158 Query 123765 AATC---GTTGCGTCGAAAACGGCG-CTTTTAATTTCCAAACGCTCAAACGCA--TAACA 123818 || | |||| | ||| | ||| | ||||| | | | | | ||||| | || Sbjct 3100157 AACCTACGTTGACCCTGCAACAAAGACTTATGATTTCAAGAAGTT-ACACGCAGTTGCCA 3100099 Query 123819 AA---AACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAG 123875 || | |||| |||| |||||||||||||| ||| | |||| ||| || | || Sbjct 3100098 AAGTGATCTGTGGTAAC----TTGAACAAAATTATTGATATCAATTATTACCCAGTCGAA 3100043 Query 123876 GAAGCGCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGT-TGGC 123934 ||||| || ||||| || ||| | || |||| | || | |||| ||| | || Sbjct 3100042 GAAGCACGCAGATCTAACATGCGTCACCGTCCTATCGGTATCGG-AGTCAACGGTCTTGC 3099984 Query 123935 CGACGCGTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCA---AAGTTGCTTAA 123991 || || || | || || | ||||| | ||| ||||||| || ||| || Sbjct 3099983 AGATGCATTCATGATCTTGGGTATGCCCTTCGATTCACCCGAAGCACGCAAATTG---AA 3099927 Query 123992 TACGCAAATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAA 124051 ||||| ||||| || || | | ||||||||| || |||||| | || || Sbjct 3099926 CGTTCAAATCTTTGAAACGATCTACCATGCTGCTTTGGAGAGAAGTTGCGAATTGGCTAA 3099867 Query 124052 A-ATTCACGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGT 124110 | | | | || | || |||| |||| ||| ||| || || || || || | Sbjct 3099866 AGAATTA-GGAACATATGAAACATACGAGGGATCCCCTGCAAGTAAGGGAGAATTACAAT 3099808 Query 124111 ACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCA 124170 | ||||||||||| | ||||| | || | ||| ||||| | ||||| || | Sbjct 3099807 ATGACATGTGGAACGTAACACCATCCGATCTATGGAACTGGTCTGAACTAAAAGAAAAGA 3099748 Query 124171 TATCGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTG 124230 | | ||||||||| ||||| ||||| ||| |||| |||||| || || | || Sbjct 3099747 TTGCAGAGCACGGTTTACGTAATTCGCTATTGTTGGCACCCATGCCTACTGCTTCTACCA 3099688 Query 124231 CTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGAC 124290 ||||||||||||| ||| |||| ||| || || ||||| || | ||| | | Sbjct 3099687 GTCAAATTTTAGGATTCAATGAATGCTTTGAACCTTTCACCTCAAACATCTACACAAGGC 3099628 Query 124291 GAGTGTTAGCCGGCGATTTTCAAGT 124315 | |||||||| || || || ||||| Sbjct 3099627 GTGTGTTAGCAGGAGAATTCCAAGT 3099603 >seq3 Length=3165745 Score = 122 bits (134), Expect = 8e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| || ||||| || || ||||||||||||||| |||||| | || | | Sbjct 2529446 CTCAAAACGAGATGGAGTGTGCTTTCCTTTTGGATATTGTAATCGGCCAATGTACGACCA 2529387 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||||||| || || || | || | ||||| || || || ||||| |||||||| Sbjct 2529386 TCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGTTGATCTGGTGGAATACCTTCTTTG 2529327 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 |||||||| || |||| || | || | ||| || ||||| || || || | ||| | Sbjct 2529326 TCTTGAATCTTGGCCTTGA-CGTTGTCAATGGTATCCGAAGATTCAACCTCCAAAGTGAT 2529268 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || ||||| | |||||||||||| |||||||| Sbjct 2529267 CGTCTTTCCGGTCAAAGTTTTTACAAAGATTTGCAT 2529232 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 ||| || ||||| || || ||| ||||| || || |||||| | || || Sbjct 2529672 CAAAACGAGATGAAGAGTGCTTTCTTTTTGAATGTTGTAATCGGCCAATGTACGTCCGTC 2529613 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 || |||||||| || || | ||||| ||||| ||||| || ||||| ||||||||||| Sbjct 2529612 TTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGTGGAATACCTTCTTTATC 2529553 Query 45248 TTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCG 45306 ||||| || ||||| || | || | || || || || || || || | |||| | Sbjct 2529552 CTGAATCTTGGCTTTGA-CGTTATCGATTGTATCAGATGATTCCACCTCCAAGGTAATAG 2529494 Query 45307 TTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || || | || || ||||| |||||||| Sbjct 2529493 TTTTTCCCGTCAATGTCTTGACAAAGATTTGCAT 2529460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002872297680