Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1 127 5e-24 seq3 123 6e-23 >seq1 Length=6968282 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | || ||| | ||| | || || |||||||||| |||||| ||||||||||| Sbjct 5660988 CGGAGACGCAAGACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAATCAGCCAAAGTA 5661047 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| ||||| || || ||||| | ||| || ||||| || ||| ||| Sbjct 5661048 CGCCCATCTTCCAATTGCTTACCAGCAAAGATTAAACGTTGTTGGTCTGGTGGAATACCT 5661107 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || ||||||||| ||| || || | || || ||| ||| || || | Sbjct 5661108 TCCTTGTCTTGAATCTTTGCCTTAACATTGTCAATAGTATCGTTTGATTCAACCTCGAGG 5661167 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || |||||||| || ||||| ||||||||||| Sbjct 5661168 GTGATTGTTTTACCCGTAAGGGTTTTTACAAAAATTTG 5661205 Score = 123 bits (136), Expect = 6e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| | ||| || |||||||||| |||||| ||||||||||| || |||||| Sbjct 595537 AGGACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAATCAGCCAAAGTTCTGCCATCT 595478 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||||| || ||||| | ||| || ||||| || ||||||||| || Sbjct 595477 TCCAATTGCTTTCCAGCAAAGATCAAACGTTGTTGGTCTGGTGGAATTCCTTCCTTGTCT 595418 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| ||||| | || || || || | ||||| ||| Sbjct 595417 TGGATCTTAGCCTTGACGTTGTCGATTGTGTCGGATGACTCCACCTCAAGGGTGATGGTC 595358 Query 199598 TTACCCGT 199605 ||||| || Sbjct 595357 TTACCTGT 595350 Score = 111 bits (122), Expect = 4e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || ||||| ||||||| ||||||||||||||| || | ||| ||||||| ||||| || Sbjct 6898225 GTGGACTCTTTTTGGATGTTGTAGTCAGCCAATGTGCGTCCGTCTTCCAATTGCTTACCA 6898166 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 ||||| |||||||| || ||||| || ||| |||||| || || ||||| || Sbjct 6898165 GCGAAAATGAGACGTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGGATCTTGGCTTTG 6898106 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || || | || || | |||| || || | ||||| |||||||| || || || Sbjct 6898105 ACATTATCAATTGTATCACTGCTTTCGACTTCTAGTGTGATTGTCTTACCAGTAAGTGTC 6898046 Query 199613 TTCACAAAAATTTG 199626 || ||||| ||||| Sbjct 6898045 TTGACAAAGATTTG 6898032 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| | || || |||||||||| |||||| ||||||||||| Sbjct 6898477 CGAAGACGCAACACCAAGTGCAAGGTAGATTCCTTTTGGATGTTGTAATCAGCCAAAGTA 6898418 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||||| || || || || ||||| | ||| || ||||| || || ||| Sbjct 6898417 CGGCCGTCTTCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCTGGCGGGATACCT 6898358 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || |||||||| || || || | ||||| | | ||| || ||||| Sbjct 6898357 TCTTTGTCTTGAATCTTGGCTTTGACATTGTCAATCGTGTCGGAAGATTCAACTTCCAAT 6898298 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || || | ||||| ||||| ||||| Sbjct 6898297 GTGATCGTCTTTCCTGTCAATGTTTTGACAAAGATTTG 6898260 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | || ||| | |||||| || || || || || | |||||| |||||||| || Sbjct 6898021 CGGAGGCGCAAGACCAAGTGGAGTGTAGATTCTTTCTGAATGTTGTAATCAGCCAATGTG 6897962 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||| ||||||| || || || || ||||| | ||| || ||||| || || ||| Sbjct 6897961 CGTCCGTCTTCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCT 6897902 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || || ||||| || ||| || | ||||| | |||| || || | Sbjct 6897901 TCTTTGTCTTGGATCTTGGCTTTGACGTTRTCAATAGTGTCGCTGCTTTCGACTTCTAGT 6897842 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || || ||||||||||| Sbjct 6897841 GTGATTGTCTTTCCTGTTAGTGTCTTGACAAAAATTTG 6897804 Score = 93.3 bits (102), Expect = 1e-13 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| || || ||||||||||||| |||||||||||||||||| | || ||||||| || Sbjct 6897776 GTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGCCAAAGTGCGACCGTCTTCCAATTG 6897717 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| ||||| ||||| | | || ||||| || || |||||| || || ||||| Sbjct 6897716 CTTACCGGCAAAGATCAATCTTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGGATCTT 6897657 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 || || || | || || | | ||| || || | || || |||||||| || Sbjct 6897656 GGCTTTGACATTGTCAATAGTATCAGAGGATTCAACCTCAAGGGTAATTGTCTTACCAGT 6897597 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 | || || ||||| ||||| Sbjct 6897596 CAAGGTCTTGACAAAGATTTG 6897576 >seq3 Length=3165745 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || || ||||| || |||||||||| ||||| || ||||| || | || Sbjct 2529447 TCTCAAAACGAGATGGAGTGTGCTTTCCTTTTGGATATTGTAATCGGCCAATGTACGACC 2529388 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||||| ||||| || || ||||| ||||| || || || || ||| |||||| Sbjct 2529387 ATCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGTTGATCTGGTGGAATACCTTCTTT 2529328 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || |||||||| ||| ||| || | ||| || | | ||| || ||||| ||||| Sbjct 2529327 GTCTTGAATCTTGGCCTTGACGTTGTCAATGGTATCCGAAGATTCAACCTCCAAAGTGAT 2529268 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||| || || | |||||| ||||| ||||| Sbjct 2529267 CGTCTTTCCGGTCAAAGTTTTTACAAAGATTTG 2529235 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 || || || ||||| || ||||| | |||||| || ||||| || | ||| ||||| Sbjct 2529668 ACGAGATGAAGAGTGCTTTCTTTTTGAATGTTGTAATCGGCCAATGTACGTCCGTCTTCT 2529609 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 | || || || || ||||| | ||| || ||||| || ||| |||||| |||||| Sbjct 2529608 AATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGTGGAATACCTTCTTTATCCTGA 2529549 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 ||||| || ||| |||| || || | || ||| || ||||| || || || || Sbjct 2529548 ATCTTGGCTTTGACGTTATCGATTGTATCAGATGATTCCACCTCCAAGGTAATAGTTTTT 2529489 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| | || || ||||| ||||| Sbjct 2529488 CCCGTCAATGTCTTGACAAAGATTTG 2529463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178920723913886