Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2 176 5e-39 seq1 96.9 3e-15 >seq2 Length=3834998 Score = 176 bits (194), Expect = 5e-39 Identities = 382/569 (67%), Gaps = 7/569 (1%) Strand=Plus/Minus Query 132876 CAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAG 132935 |||||| |||||| ||| || || || || || || || || || ||| || | Sbjct 1007776 CAAATGGCTGAACAACAAACATGCGAAATCAGTGTGTAAACCTTCATCTCTGCTGATCAA 1007717 Query 132936 TTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGC 132995 ||| ||| ||| ||||| |||||||| | || || || |||||||| || || || Sbjct 1007716 TTCATTGGAGAATGTCAAACCGGGCATCAATCCACGCTTCTTGAGCCAGAAGATACTTGC 1007657 Query 132996 GAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAA 133055 ||| || ||||||| || || ||||| || ||||| |||| || || | || Sbjct 1007656 GAATGAACCACTGAAGAAGATACCTTCAACGGCAGCAAAAGCGACCAAACGTTCAGCAAA 1007597 Query 133056 CGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGG 133115 ||||| ||| | ||||| || ||||| || |||||| ||||||| || Sbjct 1007596 TGTGGCCCGCTTGTCAGAAATCCACTTTAGTGCCCAATCTGCCTTTGTTTTGACGACTGG 1007537 Query 133116 CATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCT--TCCGAGGAACGCACGTAGGTG 133173 || ||||| || || | ||||| | | | | | || | | ||| | ||| || Sbjct 1007536 AATTGTTTCAATAGCATCGAACAA--GAACTCGCGTTGATCAGGGTCACGGATGTATGTA 1007479 Query 133174 TCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAA 133233 || || | || || |||| ||||| | ||| ||||| |||||| || || || Sbjct 1007478 TCAATCAACAAAGAGTAAGTTTCTGAGTGAATGTTTTCCATCATGATTTGGAAACCATAG 1007419 Query 133234 AAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTG 133293 ||||| | || || | | || |||||| ||| || ||||||| ||||| ||| Sbjct 1007418 AAGCATCTTGCTTCTGCTGCTTGAACTTCTCCGCTGAATCGTTCGACCAAGTTTTCATTG 1007359 Query 133294 ACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTG 133353 ||||| || || ||||| || || |||| ||||| ||||||||| || |||||| Sbjct 1007358 ACGATACCATCAGAAGCGGCAAAGAATGCCAAAACGTGAGAGATGAAATGACGTTCGTTG 1007299 Query 133354 TCGTTCAA---GCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTC 133410 |||||||| | ||||| ||| || || ||||||| || | ||| || ||||| Sbjct 1007298 TCGTTCAACTTGTTGTCCCAATCGTGCAAATCTTTGGACAAATCAATCTCTTCTGCGGTC 1007239 Query 133411 CAAAACGACGCCTCGGCTTTTTTGTACAT 133439 || || || || || |||||||||||||| Sbjct 1007238 CAGAAAGAAGCTTCTGCTTTTTTGTACAT 1007210 >seq1 Length=6968282 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || |||||||| || ||||| ||||| |||||| |||| || || | | | Sbjct 5661208 ATGCAAATTTTTGTAAAAACCCTTACGGGTAAAACAATCACCCTCGAGGTTGAATCAAAC 5661149 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | |||| | ||| || | ||||| || || ||||| | |||||| Sbjct 5661148 GATACTATTGACAATGTTAAGGCAAAGATTCAAGACAAGGAAGGTATTCCACCAGACCAA 5661089 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | || || || || |||| || | ||| || | || |||||| Sbjct 5661088 CAACGTTTAATCTTTGCTGGTAAGCAATTGGAAGATGGGCGTACTTTGGCTGATTACAAC 5661029 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || |||| ||||| ||||| Sbjct 5661028 ATCCAAAAGGAATCCACCTTGCACTTGGTCTTGCGT 5660993 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || || || || || ||||| | || ||||| || Sbjct 6898029 ATGCAAATCTTTGTCAAGACACTTACTGGTAAGACAATCACACTAGAAGTCGAAAGCAGT 6898088 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | |||| || |||| |||||||| || ||||| | |||||| Sbjct 6898089 GATACAATTGATAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGACCAA 6898148 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||||| ||| || || || |||| |||| ||||| | ||||||||| Sbjct 6898149 CAACGTCTCATTTTCGCTGGTAAGCAATTGGAAGACGGACGCACATTGGCTGACTACAAC 6898208 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||| || | || | |||||||| ||||| Sbjct 6898209 ATCCAAAAAGAGTCCACCTTACATTTGGTATTGCGT 6898244 Score = 86.0 bits (94), Expect = 6e-12 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| | || || || || ||||| | || || || | || Sbjct 6898257 ATGCAAATCTTTGTCAAAACATTGACAGGAAAGACGATCACATTGGAAGTTGAATCTTCC 6898316 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||| | || || | | |||| || || | |||||||| || || |||||| |||| Sbjct 6898317 GACACGATTGACAATG-TCAAAGCCAAGATTCAAGACAAAGAAGGTAT-CCCGCCAGACC 6898374 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| || | || | || || ||||| |||| |||| || || | || |||| Sbjct 6898375 AACAACGTTTGATCTTTGCAGGTAAACAATTGGAAGACGGCCGTACTTTGGCTGATTACA 6898434 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||||| | || |||| |||||| ||||| Sbjct 6898435 ACATCCAAAAGGAATCTACCTTGCACTTGGTGTTGCGT 6898472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172437374720