Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1 152 2e-31 seq3 114 5e-20 >seq1 Length=6968282 Score = 152 bits (168), Expect = 2e-31 Identities = 259/367 (71%), Gaps = 15/367 (4%) Strand=Plus/Minus Query 451242 CTCCTGAAGAAATTTCATCTATGGTTCTTACTAAA-ATGAAAGAAACAGCAGAACAATAT 451300 ||||||||||||| || | ||||| ||| | ||| |||||||||||||||||| ||| Sbjct 6931984 CTCCTGAAGAAATCTCTGCCATGGT-CTTGCAAAAGATGAAAGAAACAGCAGAAGCTTAT 6931926 Query 451301 ATTGGTTCTCCA-GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACA 451359 || | | | | || ||| | || || |||| ||||| || || |||||||| || || Sbjct 6931925 -TTAGGCCACAAGGTCACTCACGCCGTTGTTACCGTTCCAGCATACTTCAATGACGCCCA 6931867 Query 451360 ACGGCAAGCAACTAAAGATGCAGG-ACATATTGCTGGTTTAAATGTTCTTCGAATTATTA 451418 ||| ||||| || || |||||||| ||| ||||| ||||| | ||| | || || | | Sbjct 6931866 ACGTCAAGCCACAAAGGATGCAGGTACA-ATTGCCGGTTTGACCGTTTTGCGTATCGTCA 6931808 Query 451419 ATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaa 451478 | ||||| ||||| || || | ||||| || | | | ||||| | || Sbjct 6931807 ACGAACCCACAGCTGCAGCAATTGCATACGGTTTGG-------ACAAGAA--GGGTGACT 6931757 Query 451479 aaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTG 451538 | || | || | |||||| ||||| || ||| ||| |||| | | || || | Sbjct 6931756 CTCAAATCATTGTGTATGATTTGGGTGGTGGTACTTTCGATGTTTCTCTTTTATCTATCG 6931697 Query 451539 AAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATA 451598 ||||||| ||||||||||| ||| || ||||||||||||| | || ||||||||| Sbjct 6931696 AAGATGGTGTATTTGAAGTCTTGGCTACTGCTGGTGATACTCATTTGGGTGGTGAAGATT 6931637 Query 451599 TTGATAA 451605 | ||||| Sbjct 6931636 TCGATAA 6931630 Score = 147 bits (162), Expect = 9e-30 Identities = 449/685 (66%), Gaps = 28/685 (4%) Strand=Plus/Minus Query 451841 ATGAAACCTGTTGATCAAGTATTACATGATTCTAAAATTAGTAAAGATAAAATTGATGAA 451900 ||||| || ||||| ||||| | | ||| || ||| || || | || ||||| Sbjct 6931394 ATGAAGCCCGTTGAACAAGTCATCAAAGATGCTGGTGTTAAAAAGGAAGATATCGATGAT 6931335 Query 451901 ATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGTCTTCTTAT 451960 |||| | || || ||||| || || ||||| || ||||| | ||||| | Sbjct 6931334 GTTGTTTTGGTCGGTGGTTCCACGCGTATTCCAAAGGTTCAACAATTGTTGAAAGAATTC 6931275 Query 451961 TTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCT 452020 |||| || ||| | | | |||| | | || ||||||||||||||||| | |||||| Sbjct 6931274 TTTGACGGTAAAGAGCCAAGTAAAGGTATTAACCCTGATGAAGCTGTTGCTTGGGGTGCT 6931215 Query 452021 GCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAATTAGGAGATATTCTGTTA 452080 || ||||||| | | || | || | | ||||||| || |||| | |||| Sbjct 6931214 GCGGTTCAAGGTGGTGTTTT----GG--CCGGTGATGAAGGTGCAGCAGATGTCTTGTTG 6931161 Query 452081 GTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTA 452140 | ||||| | ||||| | ||||| |||||||| | |||||| ||||||| || || Sbjct 6931160 ATTGATGTTAACCCTCTTACACTTGGTATTGAAACAACAGGTGGAGTGATGACAAAGTTG 6931101 Query 452141 ATTAAACG-AGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGA 452199 || ||| | | | || |||||| || ||| ||||| || ||||| || || Sbjct 6931100 ATCCCACGTAACACCGTC-ATTCCTACCAAGAAGTCTCAAATTTTCAGTACTGCTGCCGA 6931042 Query 452200 TAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGAC--------A 452251 ||||||| | ||| ||||||||||| ||||| |||||||| |||| | Sbjct 6931041 TAACCAAAACGTTGTCTTGATTCAAGTGTTCGAAGGTGAACGTGCTTTGACGTCTCAGAA 6930982 Query 452252 CGAGATAAT-AATAAACTAGGAGAATTTACT-CTTTCAAACATTCCTCCTATGCCAAGGG 452309 | | || | |||| | ||||| ||| | || || | ||||| | ||| Sbjct 6930981 CCACATGTTGGGTAAATT---CGAATTAACTGGTATCCCAC-CTGCTCCT----CGAGGT 6930930 Query 452310 GAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTG 452369 | | || ||||| ||| | || | || | || ||||| || || | || || | Sbjct 6930929 GTA--CCACAAATCGAAGTCACTTTCGAATTGGACGCAAACGGAATCATGAAAGTTTCCG 6930872 Query 452370 CAGTTGAAAAATCATCTGGAAAATCAGAAAAAATTACAATTACTAATGATAAAAACCGTT 452429 | | ||| ||| | | |||||||| |||| |||| || || || |||||| |||| Sbjct 6930871 CTGCTGATAAAGGAACAGGAAAATCCGAAAGTGTTACCATCACCAACGATAAAGGTCGTT 6930812 Query 452430 TATCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATG 452489 | || ||||| | ||| |||| ||||| | ||||| ||| |||| || | |||| Sbjct 6930811 TGACTGAAGAACAAATTCAAAAGATGGTCAAAGAAGCTGAAGAATTTGCCGAACAAGATG 6930752 Query 452490 AACAAGTTAGAAAACATGTTGAAGC 452514 || ||||| | |||| | ||||||| Sbjct 6930751 AAGAAGTTCGCAAACGTATTGAAGC 6930727 Score = 138 bits (152), Expect = 4e-27 Identities = 276/404 (68%), Gaps = 4/404 (1%) Strand=Plus/Plus Query 451205 ATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATG 451264 |||||||| | || || |||||| || || || | || |||||||| || |||||| Sbjct 1554848 ATTCAAGTCGAATACAAGGGTGAACAAAAGACCTTCACACCCGAAGAAATCTCTTCTATG 1554907 Query 451265 GTTCTTACTAAA-ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGC 451323 ||| || ||||| ||| ||||| || ||| || | ||| || | ||||| Sbjct 1554908 GTT-TTGCTAAAGATGCGCGAAACTGCTGAAGCTTACTTAGGTGGAAGCGTCAAGGATGC 1554966 Query 451324 AGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGG 451383 || | ||||||||||| || ||||| || | ||||| |||||||| |||||||| || Sbjct 1554967 CGTTGTCACTGTTCCCGCATACTTCAACGACTCTCAACGTCAAGCAACCAAAGATGCCGG 1555026 Query 451384 ACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGC 451443 ||| ||||||| || ||| | || || || || || || || || |||||| | || Sbjct 1555027 TGTTATCTCTGGTTTGAACGTTATGCGTATCATCAACGAGCCAACCGCTGCTGCTATTGC 1555086 Query 451444 ATATGGACTAGGAAAATCA-AAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTG 451502 ||| || | ||| || | ||| | | |||||| || || | | || ||||| | Sbjct 1555087 ATACGG-TTTGGACAAGAAGGGCGAAGCTGGAGAAAAGAACGTTCTCATTTTCGATTTGG 1555145 Query 451503 GTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGG 451562 | || || ||| ||| || | | |||| ||||| || | || ||||| |||| Sbjct 1555146 GAGGTGGTACTTTCGATGTCTCCCTTTTGACAATCGAAGAAGGTATTTTCGAAGTCAAGG 1555205 Query 451563 CAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAAT 451606 | || |||||| ||||| | || |||||||| |||| ||| Sbjct 1555206 CTACTGCTGGTGACACTCACTTGGGTGGTGAAGACTTTGACAAT 1555249 Score = 134 bits (148), Expect = 5e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || ||||| || || |||||||| || || || || ||||||||| Sbjct 5661208 ATGCAAATTTTTGTAAAAACCCTTACGGGTAAAACAATCACCCTCGAGGTTGAATCAAAC 5661149 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | |||| ||| |||||||| |||||||| ||||| || || ||| Sbjct 5661148 GATACTATTGACAATGTTAAGGCAAAGATTCAAGACAAGGAAGGTATTCCACCAGACCAA 5661089 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||||||||| || | || || ||| | |||||||| | |||||||| ||||| || Sbjct 5661088 CAACGTTTAATCTTTGCTGGTAAGCAATTGGAAGATGGGCGTACTTTGGCTGATTACAAC 5661029 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATT 391261 || | ||||| | || | ||||| || || Sbjct 5661028 ATCCAAAAGGAATCCACCTTGCACTTGGTCTT 5660997 Score = 116 bits (128), Expect = 1e-20 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || |||||||||| || ||||| ||||| |||||||| ||| Sbjct 6897573 ATGCAAATCTTTGTCAAGACCTTGACTGGTAAGACAATTACCCTTGAGGTTGAATCCTCT 6897632 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | | ||| || || ||||| || ||||| || || || || ||| Sbjct 6897633 GATACTATTGACAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 6897692 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | || || || | || || ||| | ||||| || | |||||||| || || || Sbjct 6897693 CAAAGATTGATCTTTGCCGGTAAGCAATTGGAAGACGGTCGCACTTTGGCTGACTACAAC 6897752 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATT 391261 || | ||||| | ||||||||||| || || Sbjct 6897753 ATCCAAAAGGAGTCCACACTTCACTTGGTGTT 6897784 Score = 107 bits (118), Expect = 8e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || |||||| |||| || || || || || | || |||||||| || Sbjct 6898257 ATGCAAATCTTTGTCAAAACATTGACAGGAAAGACGATCACATTGGAAGTTGAATCTTCC 6898316 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | | ||| || |||||||| || ||||| || || || || ||| Sbjct 6898317 GACACGATTGACAATGTCAAAGCCAAGATTCAAGACAAAGAAGGTATCCCGCCAGACCAA 6898376 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||||| || || |||| |||||| | ||||| || | |||||||| ||||| || Sbjct 6898377 CAACGTTTGATCTTTGCAGGTAAACAATTGGAAGACGGCCGTACTTTGGCTGATTACAAC 6898436 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATT 391261 || | ||||| | || | ||||| || || Sbjct 6898437 ATCCAAAAGGAATCTACCTTGCACTTGGTGTT 6898468 Score = 100 bits (110), Expect = 1e-15 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 391074 ACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAACAA 391133 || ||||| || || || ||||| || || ||||| || | || || | || Sbjct 595350 ACAGGTAAGACCATCACCCTTGAGGTGGAGTCATCCGACACAATCGACAACGTCAAGGCT 595409 Query 391134 AAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAA 391193 || || ||||| |||||||||||||| || || ||||||||||| || || | || || Sbjct 595410 AAGATCCAAGACAAGGAAGGAATTCCACCAGACCAACAACGTTTGATCTTTGCTGGAAAG 595469 Query 391194 CAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCAC 391253 ||| | |||||||| ||||||||||| ||||| || || | ||||| | || | ||| Sbjct 595470 CAATTGGAAGATGGCAGAACTTTGGCTGATTACAACATCCAAAAGGAATCTACTTTGCAC 595529 Query 391254 TTAGT 391258 || || Sbjct 595530 TTGGT 595534 Score = 93.3 bits (102), Expect = 2e-13 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAAT-CATC 391108 ||| | ||||| || || ||||| || || || || || || || || || ||| || | Sbjct 6897801 ATGCAAATTTTTGTCAAGACACTAACAGGAAAGACAATCACACTAGAAGTCGAAAGCAGC 6897860 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | ||||| | ||| || || ||||| || ||||| || || || || || Sbjct 6897861 -GACACTATTGAYAACGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCA 6897919 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||||||||| || || |||| |||||| | ||||| ||| | || ||||| ||||| || Sbjct 6897920 ACAACGTTTGATCTTTGCAGGTAAACAATTGGAAGACGGACGCACATTGGCTGATTACAA 6897979 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATT 391261 ||| | || || | ||||| ||||| || || Sbjct 6897980 CATTCAGAAAGAATCTACACTCCACTTGGTCTT 6898012 >seq3 Length=3165745 Score = 114 bits (126), Expect = 5e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || ||| |||| || ||||||||||| | || || ||||||||| Sbjct 2529460 ATGCAAATCTTTGTCAAGACATTGACGGGAAAAACTATTACCTTGGAGGTGGAATCATCT 2529519 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || || | ||| || ||||| ||||| ||||| ||||| || || ||| Sbjct 2529520 GATACAATCGATAACGTCAAAGCCAAGATTCAGGATAAAGAAGGTATTCCACCAGACCAA 2529579 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||||| || || | || |||||| | ||||| ||| | || ||||| ||||| || Sbjct 2529580 CAACGTTTGATCTTTGCTGGTAAACAATTAGAAGACGGACGTACATTGGCCGATTACAAC 2529639 Query 391230 ATTGATAAGGA 391240 ||| | || || Sbjct 2529640 ATTCAAAAAGA 2529650 Score = 105 bits (116), Expect = 3e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || ||||| |||| || || || || ||| | || |||||||| || Sbjct 2529232 ATGCAAATCTTTGTAAAAACTTTGACCGGAAAGACGATCACTTTGGAGGTTGAATCTTCG 2529291 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | || || |||||||| || ||||| ||||| || |||||| Sbjct 2529292 GATACCATTGACAACGTCAAGGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGATCAA 2529351 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| | || || | || || ||| | |||||||| | || ||||| ||||| ||| Sbjct 2529352 CAACGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGTACATTGGCCGATTACAAT 2529411 Query 391230 ATTGATAAGGA 391240 || | ||||| Sbjct 2529412 ATCCAAAAGGA 2529422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975716931794264