Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1 367 1e-95 seq2 118 8e-21 seq4 96.9 3e-14 >seq1 Length=6968282 Score = 367 bits (406), Expect = 1e-95 Identities = 779/1150 (68%), Gaps = 22/1150 (2%) Strand=Plus/Minus Query 517589 AGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCA 517648 ||||| || ||||||| ||| ||||| || |||||||| |||||||| || | || | Sbjct 1555683 AGAATGGCAGCTTGAACAGCGGCACCGTAAGCAACAGCCTCATCAGGGTTGATAGACTTT 1555624 Query 517649 TTTAGTTTTTTACCATTGAAAAAATTT-GAAAGAAGTTGTCTTACCTTAGGAATACGAGA 517707 ||| | | || ||||| || | | || || || | || |||||||||| Sbjct 1555623 TTTGGCTCACGGCCGTTGAAGAAGTCGCGCAACAACTTTTGG-ACACGGGGAATACGAGT 1555565 Query 517708 TGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAA 517767 || || ||||| || || ||||| || || | ||| || | || ||||| || Sbjct 1555564 GGAACCACCAACCAAGACGATTTCGTGAACGGATCCTTTGTCAATCTTGGAATCACGCAA 1555505 Query 517768 AACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTT 517827 || || || || || || | | |||||||| || | ||||||||| Sbjct 1555504 GACCTTCTCGACTGGCTCGATAGTGTGGGAGAACAAGTCACCGCACAATTCTTCGAAACG 1555445 Query 517828 AGCTCTAGTAAGAGTGACATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCG 517886 ||| | || | || | || || ||||| || |||||||| ||||| | ||| |||| Sbjct 1555444 AGCACGGGTGATAGA-AGTGTAGAAGTCAATACCCTCGAACAATGAATCGATTTCGATCG 1555386 Query 517887 TAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTC 517946 |||||||| | ||| || |||| ||| |||||||||||||||||||| | | | | Sbjct 1555385 AAGTTTGAGCGGCAGATGAAAGTGTACGCTTAGCACGTTCACATGCTGTACGCAAACGAC 1555326 Query 517947 GTAAGGCTTTTGCTGATTGAT-TCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACA 518005 | | || || | | ||| |||| || | || |||| | |||||| |||| ||| Sbjct 1555325 GGAGAGCACGAGC-GTTGGATGTCAAGTCCTTCTTTGATTTACGCTTGAATTCTTGAACG 1555267 Query 518006 CACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTA 518065 | | ||||||||||| ||||| |||||||| ||||| | ||| | || | ||| Sbjct 1555266 AAGTGGTTGACAAGACGATTGTCAAAGTCTTCACCACCCAAGTGAGTGTCACCAGCAGTA 1555207 Query 518066 GCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCA 518125 || | |||| ||||| || ||||| | | |||||| | ||||| || ||||| Sbjct 1555206 GCCTTGACTTCGAAAATACCTTCTTCGATTGTCAAAAGGGAGACATCGAAAGTACCACCT 1555147 Query 518126 CCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGG---TTTTTATCAAGACCATAC 518182 |||| ||| ||||| || || ||| ||||| ||| | || || || | ||| || Sbjct 1555146 CCCAAATCGAAAATGAGAACGTTCTTTTCTCCAGCTTCGCCCTTCTTGTCCAAACCGTAT 1555087 Query 518183 GCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTT 518242 |||| ||||||||| ||||| || || || || | || ||| || | ||||| || Sbjct 1555086 GCAATAGCAGCAGCGGTTGGCTCGTTGATGATACGCATAACGTTCAAACCAGAGATAACA 1555027 Query 518243 CCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACG 518302 || |||||||| || ||||| | ||| || ||||| || ||||| |||||||| | |||| Sbjct 1555026 CCGGCATCTTTGGTTGCTTGACGTTGAGAGTCGTTGAAGTATGCGGGAACAGTGACAACG 1554967 Query 518303 GCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATC 518362 ||||| | || | ||| | ||||| || |||| ||| || |||| | Sbjct 1554966 GCATCCTTGACGCTTCCACCTAAGTAAGCTTCAGCAGTTTCGCGCATCTTTAGCAAAACC 1554907 Query 518363 ATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAA 518422 || || || |||| ||| || | | ||| |||| | ||| |||| || Sbjct 1554906 ATAGAAGAGATTTCTTCGGGTGTGAAGGTCTTTTGTTCACCCTTGTATTCGACTTGAATG 1554847 Query 518423 TATGGTTTATTACCAACATT---AATAACTTTAAATGGCCAGTATTTCATATCTGATTGA 518479 ||| || ||| | || ||| || | |||||||| | |||||||||||||||| Sbjct 1554846 ATTGG---CTTGCCATCTTTTGAAATGACGGTGAATGGCCAATGTTTCATATCTGATTGA 1554790 Query 518480 ACACTTTGG--TCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGG 518537 |||| | |||| || | | || || || |||||||| || |||| || ||| Sbjct 1554789 --ACTTCAGCATCATCGAATTTGCGTCCGATCAAACGTTTTGCGTCGAAAACTGTGTTGT 1554732 Query 518538 TTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAA 518597 || || ||||| |||| | || || ||||| || |||| | |||| || ||||| | Sbjct 1554731 GAGGGTTCATTGCGACTTGGTTCTTTGCGGCATCACCGATCAAACGTTCAGTGTCTGTGA 1554672 Query 518598 ATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTAC 518657 ||| |||||||||||| |||||||| ||||||||||| || ||||| | |||||| Sbjct 1554671 ATGCAACATATGATGGTGTTGTGCGGTTACCTTGATCGTTGGCAATGACTTCAACACGGT 1554612 Query 518658 CATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCAATTT 518717 |||||||||| || | ||||| | ||||| || ||||||||||| | ||| || Sbjct 1554611 CATTTTGCCAAACGGCAACACATGAGTAGGTTGTACCCAAATCAATACCGACAGC---TT 1554555 Query 518718 TATCTGACAT 518727 | ||||||| Sbjct 1554554 TTGCTGACAT 1554545 Score = 150 bits (166), Expect = 1e-30 Identities = 458/702 (65%), Gaps = 22/702 (3%) Strand=Plus/Plus Query 518020 ACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAA 518079 ||| ||||| ||||||||||| ||||| | ||||| || | ||||| |||| || Sbjct 6931626 ACGGTTATCGAAATCTTCACCACCCAAATGAGTATCACCAGCAGTAGCCAAGACTTCAAA 6931685 Query 518080 AAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAAT 518139 | |||||||| | ||| ||||||| ||||| || |||||||||| |||| | Sbjct 6931686 TACACCATCTTCGATAGATAAAAGAGAAACATCGAAAGTACCACCACCCAAATCATA--- 6931742 Query 518140 AAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 518199 ||| | |||| ||| || || || | ||| || |||| || ||||| || Sbjct 6931743 ---CACAATGATTTGAGAGTCACCCTTCTTGTCCAAACCGTATGCAATTGCTGCAGCTGT 6931799 Query 518200 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 518259 ||||| || | || | |||||| | | ||| |||||| | |||||||| || ||||| Sbjct 6931800 GGGTTCGTTGACGATACGCAAAACGGTCAAACCGGCAATTGTACCTGCATCCTTTGTGGC 6931859 Query 518260 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTT 518319 ||| | ||| | || || || ||||| ||||| |||| |||||| | ||| || | | Sbjct 6931860 TTGACGTTGGGCGTCATTGAAGTATGCTGGAACGGTAACAACGGCGTGAGTGACCTTGTG 6931919 Query 518320 ACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTC 518379 || | |||||| ||| |||| |||||| || || | ||| | || |||| ||| Sbjct 6931920 GCCTAAATAAGCTTCTGCTGTTTCTTTCATCTTTTGCAAGACCATGGCAGAGATTTCTTC 6931979 Query 518380 TGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCA--AAATATGG-----TTTAT 518432 || | | || || | | || | | |||||| | | || | ||| Sbjct 6931980 AGGAG-TGAATGTACGGGTAC-TTCCGCGA----ACTTCAACAGAGATAGCAGCTTTTCC 6932033 Query 518433 TACCAACATT-AATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCA 518491 || | || || | ||| || || ||| |||| | ||| | || Sbjct 6932034 GTCC--CGTTCAACCAATTTGAAGGGGAAGTGACGAGCATCTTTCTTGACATCAGGATCG 6932091 Query 518492 TTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCA 518551 || | | | ||||||||| || || |||||||| || ||| |||||| |||| Sbjct 6932092 TTCCATGCACGACCAATTAAACGCTTGGCATCAAAGATTGTACGTTCTGGATTTTGTGCA 6932151 Query 518552 GCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGAT 518611 ||||||| || || || || ||||| | | |||| || || | || | || Sbjct 6932152 GCTTGATTCTTTGCAGCGTCACCAATTAAACGTTCATCATCACCGAAAGCGACCCAAGAA 6932211 Query 518612 GGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACA 518671 ||||| | |||||||||||||| || ||||||||||| || ||| || | ||| Sbjct 6932212 GGAGTGATACGATTACCTTGATCGTTTGCAATAATTTCTACACGACCTTTACGTTGAACA 6932271 Query 518672 CCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 518713 || ||||| | | ||||| || ||||||||||| ||| || Sbjct 6932272 CCGACACATGAATATGTTGTACCCAAATCAATACCGATAACA 6932313 Score = 140 bits (154), Expect = 2e-27 Identities = 392/596 (66%), Gaps = 12/596 (2%) Strand=Plus/Plus Query 517141 ATCTGCTTCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAA 517200 |||| ||| ||||||||| ||||||| | | ||| | | |||||| ||||||| || Sbjct 6930753 ATCTTGTTCGGCAAATTCTTCAGCTTCTTTGACCATCTTTTGAATTTGTTCTTCAGTCAA 6930812 Query 517201 TCTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGC 517260 | || || || || || |||| | | | |||||| |||| ||||||||| || Sbjct 6930813 ACGACCTTTATCGTTGGTGATGGTAACACTTTCGGATTTTCCTGTTCCTTTATCAGCAGC 6930872 Query 517261 AGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCC 517320 | || || | || || || || ||||| || || |||||||| ||||| || || || Sbjct 6930873 GGAAACTTTCATGATTCCGTTTGCGTCCAATTCGAAAGTGACTTCGATTTGTGGTACACC 6930932 Query 517321 TCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGT 517380 || ||||||||||||| || || | ||| | |||| | | || | || Sbjct 6930933 TCGAGGAGCAGGTGGGATACCAGTTAATTCGAATTTACCCAACATGTGGTTCTGAGACGT 6930992 Query 517381 GAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGT 517440 || |||||||| ||||| | ||| || || || |||| ||||| | | ||| Sbjct 6930993 CAAAGCACGTTCACCTTCGAACACTTGAATCAAGACAACGTTTTGGTTATCGGCAGCAGT 6931052 Query 517441 TGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCAT 517500 | || | | || || || |||||| ||||| | || | || ||||| Sbjct 6931053 ACTGAAAATTTGAGACTTCTTGGTAGGAATGACGGTGTTACGTGGGATCAACTTTGTCAT 6931112 Query 517501 AATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA-T 517559 | ||||||| |||||| | |||||| | |||||| | ||||||| | |||| | Sbjct 6931113 CACTCCACCTGTTGTTTCAATACCAAGTGTAAGAGGGTTAACATCAATCA--ACAAGACA 6931170 Query 517560 TTTGAAG-TTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATAT 517618 | || | |||||| ||| | | || | | |||||| |||||||| | Sbjct 6931171 TCTGCTGCACCTTCATC------ACCGGCCAAAACACCACCTTGAACCGCAGCACCCCAA 6931224 Query 517619 GCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGA 517677 ||||||||||||||||| |||| | || | || | | |||||| | || || | || Sbjct 6931225 GCAACAGCTTCATCAGGGTTAATACCTTTACTTGGCTCTTTACCGTCAAAGAATTCTTTC 6931284 Query 517678 AAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCAT 517733 || || |||| ||||| |||||||| | || || || || || |||| |||| Sbjct 6931285 AACAA-TTGTTGAACCTTTGGAATACGCGTGGAACCACCGACCAAAACAACATCAT 6931339 >seq2 Length=3834998 Score = 118 bits (130), Expect = 8e-21 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 518167 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 518226 ||| |||||||| || |||| |||||| ||||||||||| ||||||| | | ||| | Sbjct 3373944 TTTGTCAAGACCGTAAGCAAGAGCAGCGGCAGTTGGTTCGTTAATAACACGGAGAACGTC 3374003 Query 518227 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 518286 | ||| |||||| | |||||||| || || ||||| | ||| || |||||||| || || Sbjct 3374004 CAAACCGGCAATTGTACCTGCATCCTTTGTTGCTTGACGTTGAGAGTCGTTAAAGTAAGC 3374063 Query 518287 AGGAACAGTAATAACGGC 518304 ||| |||||||| ||||| Sbjct 3374064 AGGGACAGTAATGACGGC 3374081 >seq4 Length=1961900 Score = 96.9 bits (106), Expect = 3e-14 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 671660 GAATTTTTCTTCCAAGTAATGGCAGGTCGTGAAGGTATTATTAATACGGCTATTAAAACT 671719 ||||| |||||||| | |||||||||||||||||| | ||| |||| || | |||||| Sbjct 1450208 GAATTCTTCTTCCATGCTATGGCAGGTCGTGAAGGTTTGATTGATACAGCCGTCAAAACT 1450267 Query 671720 GCTGATACTGGTTATATTCAAAGAAAACTTGTTAAA 671755 ||||| |||||||| |||||||||| | | || ||| Sbjct 1450268 GCTGAAACTGGTTACATTCAAAGAAGATTGGTCAAA 1450303 Score = 89.7 bits (98), Expect = 4e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 668850 TAAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTG 668909 ||| |||||||||||| ||| | | || || ||||||||||| |||||||| | || | Sbjct 1448760 TAAAAGGTAAAGAAGGACGTTTGCGTGGGAACTTGATGGGAAAGCGTGTCGACTTCTCGG 1448819 Query 668910 CACGTACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTCTTA 668969 | ||||| ||||||||| |||||| ||| | | | || |||||||||| || | Sbjct 1448820 CTCGTACTGTTATTACTGGTGATCCAAATTTGGAATTGGATCAAGTTGGTGTGCCAAAAA 1448879 Query 668970 TTATTGCTAAAAAT 668983 |||||| | |||| Sbjct 1448880 GTATTGCAAGAAAT 1448893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780819521848948