Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1 405 7e-108 seq2 235 7e-57 seq3 95.1 2e-14 >seq1 Length=6968282 Score = 405 bits (448), Expect = 7e-108 Identities = 829/1221 (68%), Gaps = 17/1221 (1%) Strand=Plus/Minus Query 6937 ACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAAC 6996 || || |||||| | || | ||||| || | |||||||| | || || |||||| Sbjct 1555765 ACTCACAGTTTCAATACCCATAGACAATGGGGCAACGTCCAACAACAAAAGATCTTGAGT 1555706 Query 6997 AGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGC 7056 |||| ||||| | | ||||| ||||| || | || ||||| || || || Sbjct 1555705 CTTTTCGGAAGTGTCACCGGAGAGAATGGCAGCTTGAACAGCGGCACCGTAAGCAACAGC 1555646 Query 7057 CTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTG 7116 |||||| ||||| || | || || | || ||||| || | || |||| | Sbjct 1555645 CTCATCAGGGTTGATAGACTTTTTTGGCTCACGGCCGTTGAAGAAGTCGCGCAACAACTT 1555586 Query 7117 TTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTT 7176 ||| | || || || || || ||||| ||||| |||||||| | || ||| Sbjct 1555585 TTGGACACGGGGAATACGAGTGGAACCACCAACCAAGACGATTTCGTGAACGGATCCTTT 1555526 Query 7177 ATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTC 7236 || ||||| || || || | || ||||| || || ||| | ||||||||| Sbjct 1555525 GTCAATCTTGGAATCACGCAAGACCTTCTCGACTGGCTCGATAGTGTGGGAGAACAAGTC 1555466 Query 7237 CATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTA 7296 |||| ||| || ||||| |||||||| || || || ||||| |||| || ||| | Sbjct 1555465 ACCGCACAATTCTTCGAAACGAGCACGGGTGATAGAAGTGTAGAAGTCAATACCCTCGAA 1555406 Query 7297 TAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTC 7356 || ||||| ||||| || | ||||| || | || || | || ||||| || || || Sbjct 1555405 CAATGAATCGATTTCGATCGAAGTTTGAGCGGCAGATGAAAGTGTACGCTTAGCACGTTC 1555346 Query 7357 ACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTT 7416 ||| || || || |||||||| || ||||| | ||| | | || ||||| ||| Sbjct 1555345 ACATGCTGTACGCAAACGACGGAGAGCACGAGCGTTGGATGTCAAGTCCTTCTTTGATTT 1555286 Query 7417 ACGTTTAAACTCTTCAGAGAAGTG-TCGA-AGGAGTCTCGAATCGAAATCTTCACCACCC 7474 ||| || || |||| | |||||| | || | || | | || || |||||||||||| Sbjct 1555285 ACGCTTGAATTCTTGAACGAAGTGGTTGACAAGACGATTG--TCAAAGTCTTCACCACCC 1555228 Query 7475 AAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAAC 7534 ||||| || || || || || || |||||||| || |||||| |||| || | || | Sbjct 1555227 AAGTGAGTGTCACCAGCAGTAGCCTTGACTTCGAAAATACCTTCTTCGATTGTCAAAAGG 1555168 Query 7535 GAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG 7594 || ||||| || |||||||| |||| || |||||||| |||||| | || | ||| | Sbjct 1555167 GAGACATCGAAAGTACCACCTCCCAAATCGAAAATGAGAACGTTCTTTTCTCCAGCTTCG 1555108 Query 7595 ---TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGA 7651 ||||| || | |||||| || ||||| || || ||||| || || || ||||| | | Sbjct 1555107 CCCTTCTTGTCCAAACCGTATGCAATAGCAGCAGCGGTTGGCTCGTTGATGATACGCATA 1555048 Query 7652 CAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAG 7711 ||||| |||| ||| | |||||||| || ||||| ||||| || ||||| ||| Sbjct 1555047 ACGTTCAAACCAGAGATAACACCGGCATCTTTGGTTGCTTGACGTTGAGAGTCGTTGAAG 1554988 Query 7712 TAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATA 7771 || || || || || || || || ||| |||| | ||| | || | ||| || | Sbjct 1554987 TATGCGGGAACAGTGACAACGGCATCCTTGACGCTTCCACCTAAGTAAGCTTCAGCAGTT 1554928 Query 7772 TCTTTCAT-TTTGGTAAGAACCATCGATGAAATCTCTTCAGCCG-CAAACTGTTTCGTTT 7829 || ||| ||| | || |||||| || || || ||||| | | || | ||| | || Sbjct 1554927 TCGCGCATCTTTAGCAA-AACCATAGAAGAGATTTCTTCGGGTGTGAAGGTCTTTTG-TT 1554870 Query 7830 CACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACG 7889 |||| || | || |||| ||| || || || || | | || || | | | Sbjct 1554869 CACCCTTGTATTCGACTTGAATGATTGGCTT---GCCATCTTTTGAAATGACGGTGAATG 1554813 Query 7890 ACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCT 7949 ||||| ||||||||| ||| || | || || || | |||||| | ||| | Sbjct 1554812 GCCAATGTTTCATATCTGATTGAACTTCAGCATCATCGAATTTGCGTCCGATCAAACGTT 1554753 Query 7950 TTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGA 8009 |||| || ||||||||||| | |||||||| || ||||||||| || || || |||| Sbjct 1554752 TTGCGTCGAAAACTGTGTTGTGAGGGTTCATTGCGACTTGGTTCTTTGCGGCATCACCGA 1554693 Query 8010 TAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGT 8069 | | |||||| | | || || || || || || ||||| || || || || ||||| | Sbjct 1554692 TCAAACGTTC---AGTGTCTGTGAATGCAACATATGATGGTGTTGTGCGGTTACCTTGAT 1554636 Query 8070 CGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTC 8129 |||| ||||| | ||| || ||||| |||||||| ||| | || || || || ||||| | Sbjct 1554635 CGTTGGCAATGACTTCAACACGGTCATTTTGCCAAACGGCAACACATGAGTAGGTTGTAC 1554576 Query 8130 CTAAATCAATACCGATTGCTT 8150 | ||||||||||||| |||| Sbjct 1554575 CCAAATCAATACCGACAGCTT 1554555 Score = 161 bits (178), Expect = 1e-34 Identities = 450/674 (67%), Gaps = 36/674 (5%) Strand=Plus/Minus Query 7016 GTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTT 7075 ||||| | || ||||| || | || ||||||||||| || || || ||||| || | | Sbjct 846530 GTTAAAACAGCAGCTTGAACAGCAGCACCGTATGCGACAGCTTCGTCAGGGTTGATGGAT 846471 Query 7076 TTATTCAGTTC---TTTACCGTTAAAATAATCCGATAACATTTG-TTGAATTTTCGGGAT 7131 || |||| || | |||| || ||| || ||| | ||||||||| ||||| Sbjct 846470 TTGTTCAATTGACGTCCACCG----AACAATTCGGAAACGAGAGATTGAATTTTAGGGAT 846415 Query 7132 TCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTC 7191 || || |||||||||||||| ||||| || | || || | | ||||| | || Sbjct 846414 ACGAGTAGATCCACCGACCAAGACGATATCGTCAACCTTATCAGCAGCCATCTTAGCATC 846355 Query 7192 --TCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTT-- 7247 || || |||| |||||| |||| | | ||| | || || ||| Sbjct 846354 CTTCAAAACCTTTTG--GACAGGGTCCAAAGTGCTCTTGAA----TGCAG-CAGCGTTGA 846302 Query 7248 ---CCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAAT 7304 | || ||||| |||||||| ||| || | ||| ||||| |||| | | || || | Sbjct 846301 TCTCTTCGAAACGAGCACGGGTGATGTTTGCTTGGAAGTCAACACCGTTGAACAAAGAGT 846242 Query 7305 CAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCG 7364 ||| ||| | ||| ||||| | || || || ||||| || || ||||| || | Sbjct 846241 CAACTTCGACGGTGGTTTGAGTAACACTTGACAAAGTGCGCTTAGCACGTTCACAAGCGG 846182 Query 7365 TTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAA 7424 || | |||||| ||||| |||| ||| || || ||| ||| || || |||| | Sbjct 846181 AACGAAGACGACGGGTTGCACGTGGGTCACCAGAGATGTCTGCCTTGTGCTTGCGTTCGA 846122 Query 7425 ACTC-TTCAGAGAAGTG-TCGAAGGA-GTCTCGAATCGAAATCTTCACCACCCAAGTGTG 7481 | || ||| | ||||| || || | | | | || || ||||||||||||||||| | Sbjct 846121 ATTCCTTCTTA-AAGTGGTCCAACAAAGAGTTG--TCAAAGTCTTCACCACCCAAGTGAG 846065 Query 7482 TATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACAT 7541 | || || || || || ||||| | || | ||| || ||||| ||||| ||||||| Sbjct 846064 TGTCACCAGCAGTTGCCTTGACGGCGAAAACACCACCGGTGATGTTCAACAAAGAAACAT 846005 Query 7542 CAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCG---TCGTCTTTGTTCT 7598 | || |||||||| |||| || ||||| | |||||| | ||| || |||| Sbjct 846004 CGAAAGTACCACCTCCCAAATCGAAAATCAAAACGTTCTTCTCGGTTGCGGATTTG---C 845948 Query 7599 TATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTC- 7657 | || | |||||| || || || || || || ||||| || || ||||| | | | ||| Sbjct 845947 TGTCCAAACCGTATGCAATGGCGGCAGCGGTAGGTTCGTTGATGATACGCA-AAACTTCG 845889 Query 7658 AGGCCAGCAATAGT 7671 || |||||||| || Sbjct 845888 AGTCCAGCAATGGT 845875 Score = 149 bits (164), Expect = 8e-31 Identities = 252/360 (70%), Gaps = 14/360 (4%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||||||||||||||||||| || ||||| || || || || ||||||||| | ||| Sbjct 6931632 ATCGAAATCTTCACCACCCAAATGAGTATCACCAGCAGTAGCCAAGACTTCAAATACACC 6931691 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCA---AAAATGAG 7572 |||| || ||| | |||||||| || ||||||||||||| ||| | ||||| Sbjct 6931692 ATCTTCGATAGATAAAAGAGAAACATCGAAAGTACCACCACCCAAATCATACACAATGA- 6931750 Query 7573 TACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632 || | | ||| | ||||| || | |||||| || || || || || || || Sbjct 6931751 ----TTTG-AGAGTCACC---CTTCTTGTCCAAACCGTATGCAATTGCTGCAGCTGTGGG 6931802 Query 7633 TTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692 ||| || | ||||| | | | ||| || ||||| || | ||||| || || ||||| Sbjct 6931803 TTCGTTGACGATACGCAAAACGGTCAAACCGGCAATTGTACCTGCATCCTTTGTGGCTTG 6931862 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 ||||| | || || ||||| || || || || || || |||| ||||| || | || Sbjct 6931863 ACGTTGGGCGTCATTGAAGTATGCTGGAACGGTAACAACGGCGTGAGTGACCTTGTGGCC 6931922 Query 7753 GAGATACGATTCCGCGATATCTTTCAT-TTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811 | ||| | ||| || | |||||||| ||| | ||| ||||| | || || ||||||| Sbjct 6931923 TAAATAAGCTTCTGCTGTTTCTTTCATCTTTTGCAAG-ACCATGGCAGAGATTTCTTCAG 6931981 Score = 143 bits (158), Expect = 3e-29 Identities = 319/476 (67%), Gaps = 12/476 (3%) Strand=Plus/Minus Query 7676 GCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCG 7735 ||||| || || || ||||| || ||||| ||||| || || || || || || || Sbjct 845676 GCATCCTTGGTTGCCAAACGTTGAGAGTCGTTGAAGTATGCGGGAACTGTGACAACTGCC 845617 Query 7736 TCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATC 7795 | | | |||| ||||||| | | ||| || || || ||||| ||||| | |||||| Sbjct 845616 TTCTTAACTTCTTTACCGATCTTTGCTTCGGCAATTTCCTTCATCTTGGTCAAAACCATA 845557 Query 7796 GATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATG 7855 | || || |||| || | || || ||| ||||||| | ||||||||||| | Sbjct 845556 GCAGAGATTTCTTGAGGAGAGAATTGCTTCTTTTCACCCAAGTATTCAACTTCAATGAAT 845497 Query 7856 GG--TTTATCCGCAG-CACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGG 7912 || || | | | || || | | | | | ||| | ||||||| | | | Sbjct 845496 GGACTTCCTTCTTTGTCAACGACGGTGA------AAGGCCAGTTGGTCATATCTTTCTTG 845443 Query 7913 ACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTG 7972 || | | |||| ||| | |||||| | ||| || ||||| ||||| || | Sbjct 845442 ACTTCTGGGTCATCAAAACGACGTCCGATCAAACGTTTAGCATCGAAAACGGTTTGACGA 845383 Query 7973 GGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTA 8032 ||||||||||| | ||||||||| || || || || || | |||||| | ||| || Sbjct 845382 GGGTTCATGGCAGCTTGGTTCTTTGCGGCATCACCAATCAAACGTTC---AGATTCGGTG 845326 Query 8033 AACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGG 8092 || |||||||| || || || || || || |||||||| || ||||| ||||| || || Sbjct 845325 AAAGCGACGTAAGAAGGTGTGGTACGGTTACCTTGGTCATTGGCAATGATTTCCACACGT 845266 Query 8093 TCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 ||||| ||| || || || || || || || || ||||| |||||||| || Sbjct 845265 TCGTTGGTCCACCAACCAACACAAGAGTAAGTGGTACCCAAATCGATACCGATGGC 845210 Score = 116 bits (128), Expect = 5e-21 Identities = 391/608 (64%), Gaps = 7/608 (1%) Strand=Plus/Plus Query 6557 TTCGCGTACTT-TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAAT 6615 || ||| |||| |||||||| || | | | ||| || |||| ||||||||||| ||| Sbjct 6930738 TTTGCGAACTTCTTCATCTTGTTCGGCAAATTCTTCAGCTTCTTTGACCATCTTTTGAAT 6930797 Query 6616 GTCTTCTTTCGATAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGA 6675 | ||||| | || | || ||||| || || || |||| |||||||||| || | Sbjct 6930798 TTGTTCTTCAGTCAAACGACCTTTATCGTTGGTGATGGTAACACTTTCGGATTTTCCTGT 6930857 Query 6676 GGCCTTATCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATT 6735 | ||||| |||| || |||| || || ||||| || | ||||| | || | Sbjct 6930858 TCCTTTATCAGCAGCGGAAACTTTCATGATTCCGTTTGCGTCCAATTCGAAAGTGACTTC 6930917 Query 6736 AATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAA 6795 ||||||||| ||| | || || | ||| ||||| ||||| || ||| |||| | | Sbjct 6930918 GATTTGTGGTACACCTCGAGGAGCAGGTGGGATACCAGTTAATTCGAATTTACCCAACAT 6930977 Query 6796 ACTGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTG 6855 ||| | | || | |||||||||||| | |||| ||| || | ||| Sbjct 6930978 GTGGTTCTGAGACGTCAAAGCACGTTCACCTTCGAACACTTGAATCAAGACAACGTTTTG 6931037 Query 6856 ATTATCTTGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGG 6915 ||||| || || ||| ||||| ||||| | ||||| || || | || Sbjct 6931038 GTTATCGGCAGCAGTACTGAAAATTTGAGACTTCTTGGTAGGAATGACGGTGTTACGTGG 6931097 Query 6916 AATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTC 6975 || | | ||||| | ||||| | ||||| | ||||| | ||||| | || || Sbjct 6931098 GATCAACTTTGTCATCACTCCACCTGTTGTTTCAATACCAAGTGTAAGAGGGTTAACATC 6931157 Query 6976 CAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGAC 7035 | | || | ||| || || | ||||| | || | | |||| || Sbjct 6931158 AATCAACAAGACATCTGCTGCACCTT------CATCACCGGCCAAAACACCACCTTGAAC 6931211 Query 7036 CGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTT 7095 || || || | || || || ||||| |||||||| |||| | | |||||||||| Sbjct 6931212 CGCAGCACCCCAAGCAACAGCTTCATCAGGGTTAATACCTTTACTTGGCTCTTTACCGTC 6931271 Query 7096 AAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAAC 7155 ||| | || |||| |||||||| || || || || || || |||||||||||||| Sbjct 6931272 AAAGAATTCTTTCAACAATTGTTGAACCTTTGGAATACGCGTGGAACCACCGACCAAAAC 6931331 Query 7156 GATTTCAT 7163 | |||| Sbjct 6931332 AACATCAT 6931339 Score = 114 bits (126), Expect = 2e-20 Identities = 227/334 (68%), Gaps = 4/334 (1%) Strand=Plus/Minus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||||||| | || || || || || || ||||| ||| || ||||| || || Sbjct 1556223 TTCATCTTCAGCCTTGTATTTCTCTGCTTCGGAAACCATGCGTTCGATATCTTCCTTGGA 1556164 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 || | ||||| || || || || || ||||||||||||||||| || | |||||| | Sbjct 1556163 TAGACGTCCCTTGTCGTTTGTGATGGTGATCTTTTCGGATTTACCGGAAGTCTTATCGGC 1556104 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 ||| | || ||| || || ||||| | |||||| | || | ||||| || Sbjct 1556103 AGCGTTAACTGACAAGATTGAGTTGGCATCCAAATCGAATGTGACTTCGATTTGAGGAAC 1556044 Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCC-- 6805 ||| | ||||| | ||| ||||| | || || ||| |||| | || |||| ||| Sbjct 1556043 ACCACGAGGTGCTGGTGGGATACCAGACAACTCGAATTTACCCAACAAGTTGTTGTCCTT 1555984 Query 6806 GTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGT 6865 | || | | |||||||||||| |||||| ||| || ||||||| ||||| Sbjct 1555983 GGTGCGTGC--ACGTTCACCTTCGAAGACTTGAATCAATACACCAGGTTGGTTATCGGCG 1555926 Query 6866 GCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAA 6899 ||||||||||||| ||||| | ||||| Sbjct 1555925 TATGTTGAGAAGATTTCAGACTTCTTGGTTGGAA 1555892 Score = 105 bits (116), Expect = 8e-18 Identities = 150/209 (72%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 || || | |||||| |||||||| | ||| || || || || | ||| ||||| Sbjct 6932104 CCAATTAAACGCTTGGCATCAAAGATTGTACGTTCTGGATTTTGTGCAGCTTGATTCTTT 6932163 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || ||||| || || | |||||||| || ||| || ||||| | || || || | Sbjct 6932164 GCAGCGTCACCAATTAAACGTTCATCATCA-CCGAAA--GCGACCCAAGAAGGAGTGATA 6932220 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCAC 8116 ||||| ||||| ||||| |||||||||||||| || | || | || ||||| || Sbjct 6932221 CGATTACCTTGATCGTTTGCAATAATTTCTACACGACCTTTACGTTGAACACCGACACAT 6932280 Query 8117 GAATACGTTGTTCCTAAATCAATACCGAT 8145 ||||| ||||| || |||||||||||||| Sbjct 6932281 GAATATGTTGTACCCAAATCAATACCGAT 6932309 >seq2 Length=3834998 Score = 235 bits (260), Expect = 7e-57 Identities = 741/1133 (65%), Gaps = 19/1133 (2%) Strand=Plus/Plus Query 104971 GCGTGGTAGATAGTTTCGAATATATCAATGTTGAGTTTTCTCGATTCTTCTGAACCGAAT 105030 || |||||||| ||||| || || | || ||| | ||| | | ||| |||| |||| Sbjct 3099897 GCATGGTAGATCGTTTCAAAGATTTGAACGTTCAATTTGCGTGCTTCGGGTGAATCGAAG 3099956 Query 105031 GTCATTCTTAACATGATAAACACGTCAGCGAGACCCTGAACACCAATACCGATGGGTCTG 105090 | ||| | || || || || | || || ||||| | || || |||||||| || | | Sbjct 3099957 GGCATACCCAAGATCATGAATGCATCTGCAAGACCGTTGACTCCGATACCGATAGGACGG 3100016 Query 105091 TGACGCATATTTGAACGTTTCCCGTTTTCGGTTGGGTAAAAGTTTTTATCAATAACCTTG 105150 |||||||| || || | | | |||| ||||||| | || ||||||||| ||| Sbjct 3100017 TGACGCATGTTAGATCTGCGTGCTTCTTCGACTGGGTAATAATTGATATCAATAATTTTG 3100076 Query 105151 TTTAAGTTACGTGTAACCATTTTCGTAACACGATGTAACT-CTTCATGGTTAAACTCGTT 105209 || ||||||| | || ||| | ||| ||||||| ||| | || || || Sbjct 3100077 TTCAAGTTACCACAGATCACTTTGGCAACTGCGTGTAACTTCTTGAAATCATAAGTCTTT 3100136 Query 105210 CTTCTCGACATCAACGTATTTTGGTAACGCGATTGATGCGAGATTACATACGGCGGTTTC 105269 || | |||||||| |||| || || || || || | ||| || ||||| ||| Sbjct 3100137 GTTGCAGGG-TCAACGTAGGTTGGCAAAGCAATCGAAGCCAAATTGCACACGGCAACTTC 3100195 Query 105270 TTCC--TTATCCGTAAACTCCAGAATTTCTGTACACAAATTTGATGATTTAATCGTACCA 105327 || | | ||| || | ||||||||| ||||| || || || || ||||| Sbjct 3100196 ATCAGGTGCACAGTAT--TCAATAATTTCTGTGCACAAGTTAGAGTTCTTGATGGTACCC 3100253 Query 105328 ACGTGTTTATGGTTCGACTTTTCAT--TACACGCGTCTTTGTAAAGCATATATGGGGTTC 105385 | | || ||||| |||||| | | || |||||||| | ||| ||||| | | Sbjct 3100254 AAATTCTTTTGGTT--ACTTTTTCTGTTTGCTGCATCTTTGTACAACATGAATGGGTTAC 3100311 Query 105386 CCGTTTCACTTTGGGATTTAATAATTGCTTTCCAAATCTCCGAAGCTGGTA-CAACTTTA 105444 | |||||| |||| |||| || ||| || | ||| | || ||| | | ||||| Sbjct 3100312 CAGTTTCAGTTTGAGATTCAAGAATAGCATACCACAACTTTTGTGCTTTGATCTTCTTTA 3100371 Query 105445 GTTGCGATACCTTCAGATTCGTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACG 105504 | | |||| |||||| ||||||||| | |||||| |||| |||||| Sbjct 3100372 CATATC-TGCCTTGCTTTTCGTAAGACTCGTAAAGTTTTTCAAATTCTTCACCGTAACAA 3100430 Query 105505 TCTGAAAGACCCTTTGCCTGATCAGGACAAAACAATGACCAATTACCATCGGATTCAACG 105564 || | | ||| | | | || || | ||| |||| | ||||| |||||| Sbjct 3100431 TCAGCCAAACCAGGGGATTCGTTGGGGCACATCAAGCACCATTCACCATTTTGTTCAACA 3100490 Query 105565 CGTTTCATGAACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTCGCCTCT 105624 || ||||||||||| ||||||||||| | || | || || || || | | ||| Sbjct 3100491 CGCTTCATGAACAAGTCTGGAATCCATAGAGCATAGAATAGTTCACGTGCACGAACTTCT 3100550 Query 105625 TCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCT 105684 || | || ||||| || | || | || || | | ||| | ||||||||||| Sbjct 3100551 TCTTTTCCGTGATTTTTGCGTAAATCCAAGAATTCAAACACATCTGAATGCCATGGTTCA 3100610 Query 105685 AAATAGACTGCAATAG-ACCCTTTACGACGC--CCCGCTTGATTGACATATCTTGCGGTT 105741 | || || |||| || |||| | | || |||||| ||||| | || ||| Sbjct 3100611 ACGTAAACGGCAAAAGCACCCGGTCTCTTGTTACCTCCTTGATCAACATAACGAGCAGTT 3100670 Query 105742 GAGTTATACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATA 105801 | |||| | || || ||||| || | ||||| | |||||| ||||| || ||| Sbjct 3100671 GTGTTAAATACACGCAACATAGGTACGATACCGTTACTTGTTCCGTTTGTACCTGCAATG 3100730 Query 105802 TGTGATTTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTG 105861 | |||| || | || | | ||||| || ||| || ||||| || || | ||| Sbjct 3100731 TATGATCCTGTTCCGCGAATGTTGTGAATGTTTAATCCGATACCACCTGCACTCTTGGAA 3100790 Query 105862 ATACGCGCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCA 105921 || ||||| ||| | |||||| |||||||| || || ||| || || | | | Sbjct 3100791 ATCATTGCACAAATTTTGAGTGTATCATAAATACCATCAATGGAATCATCTTTCATGGAA 3100850 Query 105922 ATCAGGAAACACGATGACATTTGTGGTCTGGGTGTACCAGCATTGAACAGAGTTGGTGTT 105981 | || ||| || || |||||||||||||| || |||||||||||||| || ||||||| | Sbjct 3100851 ACCAAGAAGCATGAGGACATTTGTGGTCTTGGAGTACCAGCATTGAAAAGGGTTGGTGAT 3100910 Query 105982 GCATGAATGAACAAACCTTTCGAT--AACGCTTCGTATGTTTCCAGGACGTGATCAATAT 106039 ||||| | || || |||| | || | || ||||||||| | | ||||| || Sbjct 3100911 GCATGTGT-AAAGTACTTTTCACTCAAAAGGTT-GTATGTTTCAATTGCAGCATCAACAT 3100968 Query 106040 CGTGTCCATGAATACCAATAGCGACGCGCATATAGAGATATTGGGGTGTTTCA 106092 | | ||| |||||||||| || || ||||| | | || ||| ||| ||||| Sbjct 3100969 CTTCTCCGTGAATACCAACGGCAACACGCATCAACATATGTTGTGGTCTTTCA 3101021 Score = 138 bits (152), Expect = 1e-27 Identities = 211/296 (71%), Gaps = 6/296 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || |||||||||||||||||||| || || || | ||| |||||||||| ||| Sbjct 3373810 TCAAAGTCTTCACCACCCAAGTGTGTGTCACCGTTTGTAGATTTAACTTCAAAGACACCC 3373869 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || || | || | || ||||| || |||||||| |||| || |||| || || Sbjct 3373870 TTTTGCATTTCCAAGATGGAGACATCGAATGTACCACCTCCCAAATCGAAAAC-AG--CG 3373926 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | | | ||| | | || || |||||||| || | ||| || || |||||||| Sbjct 3373927 ATAACACTGCTTTCT--GAT-TTGTCAAGACCGTAAGCAAGAGCAGCGGCAGTTGGTTCG 3373983 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 ||||||| ||| ||| || || || ||||| || | ||||| || || ||||| ||| Sbjct 3373984 TTAATAACACGGAGAACGTCCAAACCGGCAATTGTACCTGCATCCTTTGTTGCTTGACGT 3374043 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 || || ||||||||||| || ||||| || | ||| |||| | ||||| ||| || Sbjct 3374044 TGAGAGTCGTTAAAGTAAGCAGGGACAGTAATGACGGCGTGCTTGACTGGCTTTCC 3374099 Score = 93.3 bits (102), Expect = 5e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 104454 GTTCATACTTTGACTTTGGTCTATATACACACCTCTATCCGCCGCCATATCGATGATTGT 104513 ||||| ||||||||||||| || | | || | ||| || |||||||| ||||||| Sbjct 3099383 GTTCAAACTTTGACTTTGGCAAATGAATGCTCCACGATCGGCTGCCATATCAATGATTGC 3099442 Query 104514 TTTTTGACTCATTTCCCATACGGTTTTATACAATTCCTTAAGATCATCGGGTATATCAAT 104573 ||||||||| |||||||| ||||| || |||||| || | |||||| || || | Sbjct 3099443 TTTTTGACTGATTTCCCAAACGGTCTTGTACAATCTTTTGATATCATCTGGAATTCCTGG 3099502 Query 104574 AATGTTTTGAACAGACCCA 104592 || |||||||| || ||| Sbjct 3099503 AACGTTTTGAATTGATCCA 3099521 >seq3 Length=3165745 Score = 95.1 bits (104), Expect = 2e-14 Identities = 219/326 (67%), Gaps = 17/326 (5%) Strand=Plus/Plus Query 11366 CGAAACCATCCATTTCTGTTAATAATTGGTTAATTGTTTGTTCACGCTCATCGTTTGCCG 11425 ||||||| ||||||| || |||| ||| | ||| |||||| ||||| ||| | Sbjct 2232572 CGAAACCGTCCATTTGGACCAACAATTCGTTCAATGTCGATTCACGTTCATCATTTCCAC 2232631 Query 11426 CAAACCCATTCATACTTCTTTTC--------TTACCAATCGCATCAATTTCATCTATAAA 11477 | || || || |||||| ||||| || |||||||||||||| | ||| Sbjct 2232632 CGAAACCGC-----CTGCTTTTCCACGTGCTTTACCGATTGCATCAATTTCATCCACAAA 2232686 Query 11478 GATAATACACGGTTGATTTTCACGTGCCAATTCA-AATATATCACGGACTCTTTTTGCGC 11536 ||| || || || | || | || | || | || |||||||| || | | || | Sbjct 2232687 GATGATGCAAGGAGCGTGTTT-CTTGGCCGTTGAGAACATATCACGTACACGTGATGGAC 2232745 Query 11537 CTACGCCTACAAACATTTCAACGAACGATGACCCCGA-ACACTGAATAAAAGGAACGGAA 11595 | || || ||||||||||| ||||| || || || ||||| || ||| ||||| Sbjct 2232746 CGACACCAACAAACATTTCCACGAATTCAGAACCTGAGACACTCAAGAAA-GGAACACCT 2232804 Query 11596 GATTCACCCGCTATAGCACGTGCTAAAAGTGTTTTACCTGTACCTGGTTTACCTGTTAAT 11655 | ||||||||| | || || | | |||||||||||| || || ||| | ||| Sbjct 2232805 GCTTCACCCGCAGTGGCCTTGGCAAGCAATGTTTTACCTGTTCCGGGAGGACCAGATAAA 2232864 Query 11656 AATGCACCCCTTGGTATTTTAGCACC 11681 | |||||| ||||| ||||| || || Sbjct 2232865 ATTGCACCTCTTGGAATTTTGGCTCC 2232890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132339528720