Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2 253 3e-62 >seq2 Length=3834998 Score = 253 bits (280), Expect = 3e-62 Identities = 915/1403 (65%), Gaps = 39/1403 (3%) Strand=Plus/Minus Query 111606 GAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGAT 111665 |||| ||||| | ||||| ||||| || || | ||||| || || |||||| ||||| Sbjct 3101020 GAAAGACCACAACATATGTTGATGCGTGTTGCCGTTGGTATTCACGGAGAAGATGTTGAT 3100961 Query 111666 TCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATC---CACGCAACACCA 111722 ||| | || |||||| || || ||| | || | | || ||| ||||| Sbjct 3100960 GCTGCAATTGAAACATACAACCTTTTGA---GTGAAAAGTACTTTACACATGCATCACCA 3100904 Query 111723 ACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAAC 111782 ||||| ||||| |||||||| |||||||| ||||||||| || ||| | || | | Sbjct 3100903 ACCCTTTTCAATGCTGGTACTCCAAGACCACAAATGTCCTCATGCTTCTTGGTTTCCATG 3100844 Query 111783 AAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAA--ATCTCAA 111840 || || ||||| || |||| ||||| | || |||| ||| || ||| || || | Sbjct 3100843 AAAGATGATTCCATTGATGGTATTTATGATACACTCAA--AATTTGTGCAATGATTTCCA 3100786 Query 111841 AGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAG-TCTCGTATT 111899 || | || ||||||||||| | |||| || | | | | |||| | || ||| Sbjct 3100785 AGAGTGCAGGTGGTATCGGATTAAACATTCACAACATTCGCGG-AACAGGATCATACATT 3100727 Query 111900 AGAGGTACAAATGGT-CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCAC 111958 ||||||||| || ||| | | ||||| | || ||| | || ||||||||| | || Sbjct 3100726 GCAGGTACAAACGGAACAAGTA-ACGGTATCGTACCTATGTTGCGTGTATTTAACACAAC 3100668 Query 111959 AGCGCGCTATGTAAACCAAGCTGGGCGTCGCAAGGGATC------TATCGCAGTCTATCT 112012 || || ||||| | |||| || | |||| || | | | || || || | Sbjct 3100667 TGCTCGTTATGTTGATCAAGGAGG---TAACAAGAGACCGGGTGCTTTTGCCGTTTACGT 3100611 Query 112013 TGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGA 112072 ||| |||||||| | ||| | | || ||| | || || || || || || | || Sbjct 3100610 TGAACCATGGCATTCAGATGTGTTTGAATTCTTGGATTTACGCAAAAATCACGGAAAAGA 3100551 Query 112073 GGAGGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGA 112131 || | || ||| || || || |||| ||||| ||||||||||| | ||||||||| Sbjct 3100550 AGAAGTTCG-TGCACGTGAACTATTCTATGCTCTATGGATTCCAGACTTGTTCATGAAGC 3100492 Query 112132 GAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCG 112191 | ||||| | | ||| | |||| | | || || || | | || ||| | | | Sbjct 3100491 GTGTTGAACAAAATGGTGAATGGTGCTTGATGTGCCCCAACGAATCCCCTGGTTTGGCTG 3100432 Query 112192 ATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGA 112251 || ||||| || |||||| || ||| ||||| ||| ||| | | Sbjct 3100431 ATTGTTACGGTGAAGAATTTGAAAAACTTTACGAGTCTTACGAA-AAGCAAGGCAGATAT 3100373 Query 112252 CTGC-GACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACT 112310 | || | | ||| | ||||| | |||||||| | |||||||| || ||| Sbjct 3100372 GTAAAGAAGATCAAAGCACAAAAGTTGTGGTATGCTATTCTTGAATCTCAAACTGAAACT 3100313 Query 112311 GGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTG 112370 |||| |||| ||| | |||||||| || ||| ||| ||||| |||||||||||| Sbjct 3100312 GGTAACCCATTCATGTTGTACAAAGATGCAGCAAACAGAAAAAGTAACCAAAAGAATTTG 3100253 Query 112371 GGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAG-ACA-AAGATG 112428 ||| ||||||| || ||| | || |||||||| | ||| ||| | || |||| Sbjct 3100252 GGTACCATCAAGAACTCTAACTTGTGCACAGAAATTATTGAA--TACTGTGCACCTGATG 3100195 Query 112429 AGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAA 112488 | || ||||| || | || || || ||| | || | || || || || | |||| Sbjct 3100194 AAGTTGCCGTGTGCAATTTGGCTTCGATTGCTTTGCCAACCTACGTTGACCCTGCAACAA 3100135 Query 112489 AGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACA 112548 |||| | ||||| | || | |||| |||| | ||| || ||| | |||| Sbjct 3100134 AGACTTATGATTTCAAGAAGTTACACGCAGTTGCCAAAGTGATCTGTGGTAACTTGAACA 3100075 Query 112549 GAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACC 112608 | ||||||||| |||| |||||| || || || || | |||||| ||| | |||| Sbjct 3100074 AAATTATTGATATCAATTATTACCCAGTCGAAGAAGCACGCAGATCTAACATGCGTCACC 3100015 Query 112609 GTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACG-CA 112667 |||| || ||| |||| ||| | ||||| || |||| |||||| | | | | | | | Sbjct 3100014 GTCCTATCGGTATCGGAGTCAACGGTCTTGCAGATGCATTCATGATCT-TGGGTATGCCC 3099956 Query 112668 TTTGATTCCGACGAAGCGAAGGAAA-TCAATGCGCGTATATTTGAGACAATGTATCACGC 112726 || ||||| |||||| | | ||| | || | | || ||||| || || || || || Sbjct 3099955 TTCGATTCACCCGAAGC-ACGCAAATTGAACGTTCAAATCTTTGAAACGATCTACCATGC 3099897 Query 112727 CGCTCTTGAGGCGAGTTCGGAGTTGGC-AGAGGTTGATGGTCCATATGAAACCTTTGAGG 112785 ||| | ||| |||| || ||||| | || | | || |||||||||| | |||| Sbjct 3099896 TGCTTTGGAGAGAAGTTGCGAATTGGCTAAAGAATTA-GGAACATATGAAACATACGAGG 3099838 Query 112786 GTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TT 112844 | || || || | || | | |||| ||| |||| |||| || | |||| | | Sbjct 3099837 GATCCCCTGCAAGTAAGGGAGAATTACAATATGACATGT-GGAACGTAACACCATCCGAT 3099779 Query 112845 CACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTT 112904 | | ||||| | || || ||| || ||| | ||| | ||||| || Sbjct 3099778 CTATGGAACTGGTCTGAACTAAAAGAAAAGATTGCAGAGCACGGTTTACGTAATTCGCTA 3099719 Query 112905 TTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTT 112964 ||| ||||||| ||||| || || || ||| ||||| || || |||||||||||| Sbjct 3099718 TTGTTGGCACCCATGCCTACTGCTTCTACCAGTCAAATTTTAGGATTCAATGAATGCTTT 3099659 Query 112965 GAACCCTACACGACGAACATCTA 112987 ||||| | ||| | |||||||| Sbjct 3099658 GAACCTTTCACCTCAAACATCTA 3099636 Score = 82.4 bits (90), Expect = 9e-11 Identities = 144/205 (70%), Gaps = 10/205 (5%) Strand=Plus/Plus Query 102093 TTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAG-CGGATTGGGCTATGAAGTG 102151 || || || || ||||| ||||| || |||||| |||| | |||||||| | ||||| Sbjct 1007516 TTCGATGCTATTGAAACAATTCCA-GTCGTCAAAACAAAGGCAGATTGGGCACTAAAGTG 1007574 Query 102152 GTTTGAT-ACAAAGTCGCGTTCC---TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTG 102207 | || | |||| ||| || |||||||| || | |||| ||||| |||| Sbjct 1007575 GATTTCTGACAA----GCGGGCCACATTTGCTGAACGTTTGGTCGCTTTTGCTGCCGTTG 1007630 Query 102208 AGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCA 102267 | |||||||||||| |||||| ||| ||| | |||||||||||||| || | | Sbjct 1007631 AAGGTATCTTCTTCAGTGGTTCATTCGCAAGTATCTTCTGGCTCAAGAAGCGTGGATTGA 1007690 Query 102268 TGCCAGGTCTCTGCTTCTCCAACGA 102292 |||| ||| | |||||||| || Sbjct 1007691 TGCCCGGTTTGACATTCTCCAATGA 1007715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741949961760