Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq2 212 7e-50 >seq2 Length=3834998 Score = 212 bits (234), Expect = 7e-50 Identities = 593/900 (66%), Gaps = 15/900 (2%) Strand=Plus/Plus Query 110331 GTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATT 110390 |||||| | |||||| || |||||||| || |||| ||| |||||| ||||| || || Sbjct 3100208 GTATTCAATAATTTCTGTGCACAAGTTAGAGTTCTTGATGGTACCCAAATTCTTTTGGTT 3100267 Query 110391 CGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGA 110450 ||| ||| |||||| || || | |||| ||||| |||||||||| || || || Sbjct 3100268 ACTTTTTCTGTTTGCTGCATCTTTGTACAACATGAATGGGTTACCAGTTTCAGTTTGAGA 3100327 Query 110451 CTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAGA--CCTTCC 110508 | ||||| || | ||| | | || || | | ||| | |||| | Sbjct 3100328 TTCAAGAATAGCATACCACAACTTTTGTGCTTTGATCTT--CTTTACATATCTGCCTTGC 3100385 Query 110509 TCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTC 110568 | ||||| ||| | | |||||||| | ||||| ||||| | ||| Sbjct 3100386 TTTTCGTAAGACTCGTAAAGTTTTTCAAATTCTTCACCGTAACAATCAGCCAAACCAGGG 3100445 Query 110569 GCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGG 110628 | | || ||| || | | | |||| | ||| | ||||| | ||||||||||| | Sbjct 3100446 GATTCGTTGGGGCACATCAAGCACCATTCACCATTTTGTTCAACACGCTTCATGAACAAG 3100505 Query 110629 TCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTG 110688 || |||||||| | || |||| || ||||| |||| | ||||| | || || || Sbjct 3100506 TCTGGAATCCATAGAGCATAGAATAGTTCACGTGCACGAACTTCTTCTTTTCCGTGATTT 3100565 Query 110689 AGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATG 110748 ||||| ||||| || || | | ||| || ||||||||||| | || || || | Sbjct 3100566 TTGCGTAAATCCAAGAATTCAAACACATCTGAATGCCATGGTTCAACGTAAACGGCAAAA 3100625 Query 110749 GATCCCTTACGACG---ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTG 110805 | ||| | ||| | || | |||||| || || || | || || || | Sbjct 3100626 GCACCCGGTCTCTTGTTACCTCCTTGATCAACATAACGAGCAGTTGTGTTAAATACACGC 3100685 Query 110806 AGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAAT-TCTGGACTTATTGGC 110864 | |||||| | || || | | || |||||||| ||| | || | | || | Sbjct 3100686 AACATAGGTACGATACCGTTACTTGTTCCGTTTGTACCTGCAATGTATGATCCTGTTC-C 3100744 Query 110865 ACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTC 110924 ||||||| ||| || | | || |||||||| || | ||| ||| |||||| Sbjct 3100745 GCGAATGTTGTGAATGTTTAATCCGATACCACCTGCACTCTTGGAAATCATTGCACAAAT 3100804 Query 110925 TGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGA 110984 | |||||||| |||||||||||||||| ||||| | || ||| || | ||||| || Sbjct 3100805 TTTGAGTGTATCATAAATACCATCAATGGAATCATCTTTCATGGAAACCAAGAAGCATGA 3100864 Query 110985 AGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAG 111044 ||||| || || | || || || |||||||| || || |||| ||||| || | || Sbjct 3100865 GGACATTTGTGGTCTTGGAGTACCAGCATTGAAAAGGGTTGGTGATGCATG--TGTAAAG 3100922 Query 111045 ACCTTGGGAC--ATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATA 111102 ||| || | ||||||||| || | ||| | ||||||| ||||||||| Sbjct 3100923 TACTTTTCACTCAAAAGGTTGTATGTTTCAATTGCAGCATCAACATCTTCTCCGTGAATA 3100982 Query 111103 CCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGC 111162 |||| |||||| ||||| ||||||| ||| || |||| | ||||||| | |||| Sbjct 3100983 CCAACGGCAACACGCATCAACATATGTTGTGGTCTTTCAGCAACTTTTCCATTGATACGC 3101042 Query 111163 TGAAGGTA-ACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCGAAATCACGATC 111221 |||||| || | ||||||||||||| ||||||| | | | | |||||||||||| Sbjct 3101043 AAAAGGTATGATCGT-TCTAGGGTCTTGAAACCAAAGAAGTTATAGTGGAAATCACGATC 3101101 Score = 95.1 bits (104), Expect = 1e-14 Identities = 95/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 109522 ATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACA 109581 |||||| |||||||| || ||||| || ||||| ||||| || |||||||| || Sbjct 3099405 ATGAATGCTCCACGATCGGCTGCCATATCAATGATTGCTTTTTGACTGATTTCCCAAACG 3099464 Query 109582 GTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACG-ATGTTTTGAATAGAGCCACC 109640 ||||||||||| | ||||||||||| ||||| ||| | | ||||||||| || ||||| Sbjct 3099465 GTCTTGTACAATCTTTTGATATCATCTGGAAT-TCCTGGAACGTTTTGAATTGATCCACC 3099523 Query 109641 A 109641 | Sbjct 3099524 A 3099524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975572992400