Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2 192 7e-44 >seq2 Length=3834998 Score = 192 bits (212), Expect = 7e-44 Identities = 1064/1666 (64%), Gaps = 61/1666 (4%) Strand=Plus/Plus Query 105683 TTCATACTTTGACTCTGGTCAATGAAGCGACCACGTTGTGCCGCCATATCAATGACATCC 105742 |||| ||||||||| ||| |||||| ||||| | || ||||||||||||| | Sbjct 3099384 TTCAAACTTTGACTTTGGCAAATGAATGCTCCACGATCGGCTGCCATATCAATGATTGCT 3099443 Query 105743 TTCATCTTGATTTCCCACACTGTGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAG 105802 || |||||||||| || || ||| | | |||||||||||||| || ||| Sbjct 3099444 TTTTGACTGATTTCCCAAACGGTCTTGTACAATCTTTTGATATCATCTGGAATTCCTGGA 3099503 Query 105803 ATATTTTGAATTGAACCCCCC---GCCTTGACCATGAGATCCTTCATATCCTTGGACCAA 105859 | ||||||||||| || || || ||| || | |||||| | ||||| Sbjct 3099504 ACGTTTTGAATTGATCCACCATGAGCAATGATTCTG---TTCTTCATTGTTTCTGACCAT 3099560 Query 105860 AGACCAATCTTCTTGAGATCATTG-ACGAGATG--CTTG--TTGACAATCACAAACTCTC 105914 || || | ||| | || || ||| || | || || |||| || |||| Sbjct 3099561 AGTCCT-TGTTCC----ACCAATGTACGTAATAACCATGGGTTAACAACTTGGAATTCTC 3099615 Query 105915 CCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTAC 105974 | || | | || |||||||| | ||| | ||||||||||||||||| | Sbjct 3099616 CTGCTAACACACGCCTTGTGTAGATGTTTGAGGTGAAAGGTTCAAAGCATTCATTGAATC 3099675 Query 105975 CCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGAC 106034 | || ||||| ||| || || || ||||| ||||||| ||| || ||||| | || Sbjct 3099676 CTAAAATTTGACTGGTAGAAGCAGTAGGCATGGGTGCCAACAATAGCGAATTACGTAAAC 3099735 Query 106035 CCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCACC 106092 | | || || ||| || || || ||||| | ||| | | |||| | || Sbjct 3099736 CGTGCTCTGCAATCTTTTCTTTTAGTTCAGACCAGTTCCATAGAT-CGGATGGTGTTACG 3099794 Query 106093 TTCCCACATATCAAATTG-AAGCACCCCTTGGGACGTG--GGAGAACCCTCAAATGTCTC 106149 || |||||| ||| |||| || ||||| || || || || ||||| |||| || Sbjct 3099795 TT-CCACATGTCATATTGTAATTCTCCCTT---ACTTGCAGGGGATCCCTCGTATGTTTC 3099850 Query 106150 ATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGT 106209 ||| | ||| ||| ||||||||| || || ||||| | || || || || || Sbjct 3099851 ATATGTTCCTAATTCTTTAGCCAATTCGCAACTTCTCTCCAAAGCAGCATGGTAGATCGT 3099910 Query 106210 TTCAAAGATACGAGCATTC-ATCTCCTTGGCTTCATCTGAATC-AAATGCGTAGCGGCAC 106267 ||||||||| || | ||| || | | | ||||| |||||| || || || | | Sbjct 3099911 TTCAAAGATTTGAACGTTCAATTTGCGT-GCTTCGGGTGAATCGAAGGGCATA-CCCAAG 3099968 Query 106268 AAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTA 106327 | || ||| |||| || ||||| | || || | ||| ||||| | ||| ||||| ||| Sbjct 3099969 ATCATGAATGCATCTGCAAGACCGTTGACTCCGATACCGATAGGACGGTGACGCATGTTA 3100028 Query 106328 GACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTG 106387 || | || || || || || ||| |||| | ||||| | | ||| | || Sbjct 3100029 GATCTGCGTGCTTCTTCGACTGGGTAATAATTGATATCAATAATTTTGTTCAAGTT---- 3100084 Query 106388 GTAACA-ATC---TTTGTGATTTCATG-AAGTTTTTCATAATCAAAAGTGCGAGTCTCTT 106442 ||| ||| || | | | | || || || || | ||||| |||| || | Sbjct 3100085 ACCACAGATCACTTTGGCAACTGCGTGTAACTTCTTGA-AATCATAAGTCTTTGTTGCAG 3100143 Query 106443 CATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTAT 106502 | || || |||| | || || || ||||||||||| || || ||||| Sbjct 3100144 GGTCAACGTAGGTTGGCAAAGCAATCGAAGCCAAATTGCACACGGCAACTTCATCAGGTG 3100203 Query 106503 CTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTT 106562 | ||| || | ||||||||| |||||||| || |||| || || ||||||||||||| Sbjct 3100204 CACAGTATTCAATAATTTCTGTGCACAAGTTAGAGTTCTTGATGGTACCCAAATTCTTTT 3100263 Query 106563 GGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCT 106622 ||||||| ||| |||| ||||| ||||| | |||| | || | || || || || | Sbjct 3100264 GGTTACTTTTTCTGTTTGCTGCATCTTTGTACAACATGAATGGGTTACCAGTTTCAGTTT 3100323 Query 106623 GTGACTTGAGAATTGCCTTCCAC-ACATCGGCGGCTGGTACAATGGCGTTGGC---CCGT 106678 | || | ||||| || | |||| || | | || | || || | | Sbjct 3100324 GAGATTCAAGAATAGCATACCACAACTTTTG----TGCTTTGATCTTCTTTACATATCTG 3100379 Query 106679 CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGA 106738 || | | ||||| ||| || |||||| || ||||| || | | | Sbjct 3100380 CCTTGCTTTTCGTAAGACTCGTAAAGTTTTTCAAATTCTTCACCGTAACAATCAGCCAAA 3100439 Query 106739 CCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 106798 || || | | || || || | | |||||| |||| | ||||| ||||||||| Sbjct 3100440 CCAGGGGATTCGTTGGGGCACATCAAGCACCATTCACCATTTTGTTCAACACGCTTCATG 3100499 Query 106799 AAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACC 106857 || | |||||||||||| || | | || || || | | || ||| | ||||| | || Sbjct 3100500 AACAAGTCTGGAATCCATAGAGCATAGAATAGTTCACGTGCA-CGAACTTCTTCTTTTCC 3100558 Query 106858 TTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGAC 106917 || || ||||| || | ||| || | | ||| | |||||||| |||| || || Sbjct 3100559 GTGATTTTTGCGTAAATCCAAGAATTCAAACACATCTGAATGCCATGGTTCAACGTAAAC 3100618 Query 106918 TGCGATAGATCCCTTTC---GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAA 106974 || | || ||| || || |||||| ||||| || || || | |||||| Sbjct 3100619 GGCAAAAGCACCCGGTCTCTTGTTACCTCCTTGATCAACATAACGAGCAGTTGTGTTAAA 3100678 Query 106975 TACGCGAAGCATTGGAATAATACCATCTGATTG-ACCATTTGTCCCCCGAATACGAGATT 107033 ||| || | ||| || | ||||| | | ||| || ||||| || ||| ||| Sbjct 3100679 TACACGCAACATAGGTACGATACCGT-TACTTGTTCCGTTTGTACCTGCAATGTATGATC 3100737 Query 107034 TATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGAT--TTG 107091 | | | | | || |||| | || ||||| || || | ||| || || ||| Sbjct 3100738 CTGTTCCGCGAATGTTGTGAATGTTTAATCCGATACCACCTGCACTCTTGGAAATCATTG 3100797 Query 107092 CGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAG 107151 | || | | | || || |||| ||||| | || || || || || ||| | | Sbjct 3100798 CACAAATT--TTGAGTGTATCATAAATACCATCAATGGAATCATCTTTCATGGAAACCAA 3100855 Query 107152 GAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTG 107211 |||||| |||||| || |||||||| |||||||||||||| |||||||||| ||| || Sbjct 3100856 GAAGCATGAGGACATTTGTGGTCTTGGAGTACCAGCATTGAAAAGGGTTGGTGATGCATG 3100915 Query 107212 AATGAACATAC-CTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCC 107270 | || ||| || || || |||||| || | ||| ||||| ||||| | Sbjct 3100916 TGT-AAAGTACTTTTCACTCAAAAGGTTGTATGTTTCAATTGCAGCATCAACATCTTCTC 3100974 Query 107271 CGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTC 107316 |||| || || | ||| |||||||| ||||| | ||| ||| |||| Sbjct 3100975 CGTGAATACCAACGGCAACACGCATCAACATATGTTGTGGTCTTTC 3101020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980372263920