Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq3 196 1e-44 seq1 154 3e-32 >seq3 Length=3165745 Score = 196 bits (216), Expect = 1e-44 Identities = 173/216 (80%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCC 194984 ||||||||| || || || ||| || ||||| |||||||||||||| | || | || Sbjct 2529447 TCTCAAAACGAGATGGAGTGTGCTTTCCTTTTGGATATTGTAATCGGCCAATGTACGACC 2529388 Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044 |||||| | |||||||| || |||||||| |||||||| ||||| ||||| |||||||| Sbjct 2529387 ATCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGTTGATCTGGTGGAATACCTTCTTT 2529328 Query 195045 GTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAAC 195104 ||||||||| || ||||||||| |||||||| |||||| ||| || || | || | Sbjct 2529327 GTCTTGAATCTTGGCCTTGACGTTGTCAATGGTATCCGAAGATTCAACCTCCAAAGTGAT 2529268 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||||||| |||||||||||||| || | |||||| Sbjct 2529267 CGTCTTTCCGGTCAAAGTTTTTACAAAGATTTGCAT 2529232 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 |||||| || ||||||||| ||||||||||| ||||||||||| | || | || || Sbjct 2529672 CAAAACGAGATGAAGAGTGCTTTCTTTTTGAATGTTGTAATCGGCCAATGTACGTCCGTC 2529613 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | || ||||| || ||||| | |||||||||||||| ||||| |||||||| || Sbjct 2529612 TTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGTGGAATACCTTCTTTATC 2529553 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||||| || |||||||| || || || || || |||||| || | ||||| || Sbjct 2529552 CTGAATCTTGGCTTTGACGTTATCGATTGTATCAGATGATTCCACCTCCAAGGTAATAGT 2529493 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| ||||| || || || || | |||||| Sbjct 2529492 TTTTCCCGTCAATGTCTTGACAAAGATTTGCAT 2529460 >seq1 Length=6968282 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | ||| | || || || ||||| || |||||||| || | ||| | || || Sbjct 6898469 CAACACCAAGTGCAAGGTAGATTCCTTTTGGATGTTGTAATCAGCCAAAGTACGGCCGTC 6898410 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | || |||||||| ||||| | |||||||||||||| || || ||||||||||| Sbjct 6898409 TTCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCTGGCGGGATACCTTCTTTGTC 6898350 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 |||||| || ||||| || ||||| ||||| ||| ||| ||||| | || | ||| Sbjct 6898349 TTGAATCTTGGCTTTGACATTGTCAATCGTGTCGGAAGATTCAACTTCCAATGTGATCGT 6898290 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||||||||| ||||| || || | |||||| Sbjct 6898289 CTTTCCTGTCAATGTTTTGACAAAGATTTGCAT 6898257 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || | |||||| |||||||| ||||| || ||||| || || | ||| | Sbjct 6897791 GAGACGCAACACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGCCAAAGTGCG 6897732 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 || ||||| | |||||||| || ||||| | || |||||||||||| || || ||||| Sbjct 6897731 ACCGTCTTCCAATTGCTTACCGGCAAAGATCAATCTTTGTTGGTCTGGTGGGATACCTTC 6897672 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||||||| || || ||||| || ||||| || || || ||| || |||||||| Sbjct 6897671 TTTGTCTTGGATCTTGGCTTTGACATTGTCAATAGTATCAGAGGATTCAACCTCAAGGGT 6897612 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || ||||| || || || || | |||||| Sbjct 6897611 AATTGTCTTACCAGTCAAGGTCTTGACAAAGATTTGCAT 6897573 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || | ||| || || || ||||| ||||| |||||||| || | || | Sbjct 6898019 GAGGCGCAAGACCAAGTGGAGTGTAGATTCTTTCTGAATGTTGTAATCAGCCAATGTGCG 6897960 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 || ||||| | || |||||||| ||||| | |||||||||||||| || || ||||| Sbjct 6897959 TCCGTCTTCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTC 6897900 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||||||| || || |||||||| ||||| ||||| ||||| ||||| || || Sbjct 6897899 TTTGTCTTGGATCTTGGCTTTGACGTTRTCAATAGTGTCGCTGCTTTCGACTTCTAGTGT 6897840 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||||||||| | || || || || | |||||| Sbjct 6897839 GATTGTCTTTCCTGTTAGTGTCTTGACAAAAATTTGCAT 6897801 Score = 140 bits (154), Expect = 7e-28 Identities = 139/180 (77%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| | ||| || || ||||| || |||||||| || | |||||| |||||||| | || Sbjct 595529 GTGCAAAGTAGATTCCTTTTGGATGTTGTAATCAGCCAAAGTTCTGCCATCTTCCAATTG 595470 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| | |||||||||||||| ||||| ||||| |||||||| || || Sbjct 595469 CTTTCCAGCAAAGATCAAACGTTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTT 595410 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| || || ||||| || ||||| |||||||| | ||||| ||||| Sbjct 595409 AGCCTTGACGTTGTCGATTGTGTCGGATGACTCCACCTCAAGGGTGATGGTCTTACCTGT 595350 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || | ||| | ||||| || ||||| || |||||||| || | ||| | Sbjct 5660990 GAGACGCAAGACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAATCAGCCAAAGTACG 5661049 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 ||||||||| | |||||||| || ||||| | |||||||||||||| ||||| ||||| Sbjct 5661050 CCCATCTTCCAATTGCTTACCAGCAAAGATTAAACGTTGTTGGTCTGGTGGAATACCTTC 5661109 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||||||||| ||| ||| || || ||||| || || ||| || || ||||| Sbjct 5661110 CTTGTCTTGAATCTTTGCCTTAACATTGTCAATAGTATCGTTTGATTCAACCTCGAGGGT 5661169 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | |||||||| || | |||||| Sbjct 5661170 GATTGTTTTACCCGTAAGGGTTTTTACAAAAATTTGCAT 5661208 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 |||||||||||||| || ||||| || || | || | || ||||| | |||||||| Sbjct 6898225 GTGGACTCTTTTTGGATGTTGTAGTCAGCCAATGTGCGTCCGTCTTCCAATTGCTTACCA 6898166 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 ||||| || || |||||||||||||| ||||| |||||||||||||| || || ||| Sbjct 6898165 GCGAAAATGAGACGTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGGATCTTGGCTTTG 6898106 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || ||||| || || ||||| ||||| || || | ||||| || || | || Sbjct 6898105 ACATTATCAATTGTATCACTGCTTTCGACTTCTAGTGTGATTGTCTTACCAGTAAGTGTC 6898046 Query 195124 TTTACGAACACTTGCAT 195140 || || || | |||||| Sbjct 6898045 TTGACAAAGATTTGCAT 6898029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109480775516486