Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq4 114 2e-20 >seq4 Length=1961900 Score = 114 bits (126), Expect = 2e-20 Identities = 162/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 104989 AGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACATGCTGGAGCTCAATATAT 105048 || ||||||| |||||||| | || || ||||||||||||||| |||||| |||| | Sbjct 1780586 AGCAGGTGATCTAGGACCAGTATACGGCTTTCAATGGAGACATTTTGGAGCAGAATACAA 1780527 Query 105049 CGACTGTGATACCGACTATACCGGCCAAGGTATAGACCAATTAAGTCAAGTTATAGAAAC 105108 || ||| || ||||| || |||||| | || |||||||| |||| || || | Sbjct 1780526 AACGTGCGATGATGATTATACAGGACAAGGTGTTGATCAATTAAGAGAAGTGATTGATAA 1780467 Query 105109 TATAAAAAATAACCCCGGGTGTCGAAGAATAATTATAGATAGTTGGAATGTGTCACAATT 105168 || |||||||| || ||||||||||||| | | |||||| | || | || Sbjct 1780466 AATTAAAAATAATCCAACAGATCGAAGAATAATTTTGAGTGCATGGAATCCGGCAGATTT 1780407 Query 105169 ATCAGATATGGCTCTTCCACCGTGTCAT-TGTTTGGTACAATTTT 105212 | || | ||||| | ||||| |||||| ||||| || ||||||| Sbjct 1780406 AACAAAGATGGCATTACCACCTTGTCATATGTTTTGT-CAATTTT 1780363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658402722657680