Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2 313 3e-80 >seq2 Length=3834998 Score = 313 bits (346), Expect = 3e-80 Identities = 591/861 (69%), Gaps = 9/861 (1%) Strand=Plus/Minus Query 18660 TACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAA 18719 ||| ||||| ||| ||||||||||| |||| |||||||| ||||| ||||| ||| Sbjct 1008058 TACGCCCATCTTTGAGTATTCGGCAACCTTTTTCTCAAAGAAGTTAGTCTTTCCGGTTAA 1007999 Query 18720 TGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAA 18779 || || ||||| |||| ||||| || || |||| ||| |||| | || || Sbjct 1007998 AGAGATGTTCTCCATCCAATCGAATGGGTTGGTTGCATTGTATGCCTTTTCGTTACCCAA 1007939 Query 18780 TTCTAATAGTAGTCTATCCGCTACA-AATTTAATATATGTGTTCATCATATCACAATTCA 18838 | | | ||| | ||| || ||| |||| ||| ||| ||||| | | |||| Sbjct 1007938 AGCCACCAATAGACGATCAGC-ACAGAATTCAATGTATTGACACATCAATTTGGAGTTCA 1007880 Query 18839 TTCCTATTAATTTAACAGGTAGTGCATCTGT-AAGAAATTCTTGTTCTATATTTACTGCC 18897 |||| ||||| || |||| ||||| || |||||| | |||||| || || || Sbjct 1007879 TTCCGATTAAGTTGCATGGTAAAGCATCAGTTAAGAAACT-TTGTTCGATTGAGACAGCT 1007821 Query 18898 TCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATC 18957 |||| ||||| ||| |||| || || | | | | ||| | |||| | Sbjct 1007820 TCTGTGATAATCTTGTTCACTGTATCAGGATGAGCGCGCTTACGCAAATGGCTGAACAAC 1007761 Query 18958 AAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTT 19017 |||||||| |||||| |||| || || ||||| || ||||||||||| || ||||| Sbjct 1007760 AAACATGCGAAATCAGTGTGTAAACCTTCATCTCTGCTGATCAATTCATTGGAGAATGTC 1007701 Query 19018 AAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAG 19077 ||||| ||||||| ||| | || || | |||||| ||| || ||||| ||| ||| Sbjct 1007700 AAACCGGGCATCAATCCACGCTTCTTGAGCCAGAAGATACTTGCGAATGAACCACTGAAG 1007641 Query 19078 AATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTA 19137 || |||||||| || || |||||||| || | | ||| || | | || || | | Sbjct 1007640 AAGATACCTTCAACGGCAGCAAAAGCGACCAAACGTTCAGCAAATGTGGCCCGCTTGTCA 1007581 Query 19138 TGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAA 19197 |||||| || ||||||||||| ||||| |||| || ||| ||||| || |||| | Sbjct 1007580 GAAATCCACTTTAGTGCCCAATCTGCCTTTGTTTTGACGACTGGAATTGTTTCAATAGCA 1007521 Query 19198 TTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTAC 19257 | || | || || | ||| | || | |||| ||| ||||| ||| ||| Sbjct 1007520 TCGAACAAGAACTCGCGTTGATCAGGGTCACGGATGTATGTATCAATCAACAAAGAGTAA 1007461 Query 19258 ATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTT 19317 ||||||| ||||| ||||| || || || || || || || ||||||||||||| | Sbjct 1007460 GTTTCTGAGTGAATGTTTTCCATCATGATTTGGAAACCATAGAAGCATCTTGCTTCTGCT 1007401 Query 19318 ATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCT 19377 || ||||| | | |||| ||||||||| |||||||| || || |||||| ||| Sbjct 1007400 GCTTGAACTTCTCCGCTGAATCGTTCGACCAAGTTTTCATTGACGATACCATCAGAAGCG 1007341 Query 19378 GCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAA---TG-TATT 19433 ||||| ||||| || || || || ||||| ||| | || ||| | || | | Sbjct 1007340 GCAAAGAATGCCAAAACGTGAGAGATGAAATGACGTTCGT-TGTCGTTCAACTTGTTGTC 1007282 Query 19434 CCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493 |||||| | | |||||| || ||||| | ||||| | ||||| |||||||| ||||| Sbjct 1007281 CCAATCGTGCAAATCTTTGGACAAATCAATCTCTTCTGCGGTCCAGAAAGAAGCTTCTGC 1007222 Query 19494 TTTTTTATACATGTTCCATAT 19514 |||||| ||||| | ||| || Sbjct 1007221 TTTTTTGTACATTTGCCAAAT 1007201 Score = 235 bits (260), Expect = 6e-57 Identities = 1159/1840 (63%), Gaps = 35/1840 (2%) Strand=Plus/Plus Query 47011 TTGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATAC 47070 |||| ||||| ||||| | || |||||||| ||| ||||||| ||||| ||||||| Sbjct 3099286 TTGTACGTAAGTAATAAGTTCCCGTCTTTAATCCTTTCTTCCATCCGTAGAAGTGCATAC 3099345 Query 47071 TAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAA 47130 | || |||| | | | ||||| | | ||| || || | | |||||| || || Sbjct 3099346 TTGTCAATTGACCAAATGTAGGTGCGCTTAAATGGATGTTCAAACTTTGACTTTGGCAAA 3099405 Query 47131 TAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTG 47190 | ||||| || | ||| ||||||||||| | || | |||| || ||||| || | Sbjct 3099406 TGAATGCTCCACGATCGGCTGCCATATCAATGATTGCTTTTTGACTGATTTCCCAAACGG 3099465 Query 47191 TTTTATAAATTTGTTTAATGTCTTCTGGGAGATTAGTA---TTTTGAATAGATCCTCCgt 47247 | || || | | ||| || || ||||| | | | |||||||| ||||| || | Sbjct 3099466 TCTTGTACAATCTTTTGATATCATCTGGAATTCCTGGAACGTTTTGAATTGATCCACCAT 3099525 Query 47248 tttctataattttgttttttaattcatttgaccaaagttttcgttcagttaatgttttta 47307 | || ||| |||| || | | | |||||| ||| | |||| ||||| || Sbjct 3099526 GAGCAATGATTCTGTTCTTCATTGTTTCTGACCATAGTCCTTGTTCCACCAATGTACGTA 3099585 Query 47308 aAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTAC 47367 | | || ||||||| ||| |||||||| | || || | | | || || || Sbjct 3099586 ATAACCATGGGTTAACAACTTGGAATTCTCCTGCTAACACACGCCTTGTGTAGATGTTTG 3099645 Query 47368 TTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCA 47427 || | ||||| | ||||||| ||| ||||||||| || || || ||||||| Sbjct 3099646 AGGTGAAAGGTTCAAAGCATTCATTGAATCCTAAAATTTGACTGGTAGAAGCAGTAGGCA 3099705 Query 47428 TGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTT 47487 ||| ||| | |||| ||| | || || | | | |||| Sbjct 3099706 TGGGTGCCAACAATAGCGAATTACGTAAACCGTGCTCTGCAATCTTTTCTTTTAGTTCAG 3099765 Query 47488 TCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTAC 47547 ||| | ||| ||||| ||||| || ||||| | |||||||| | ||| |||| Sbjct 3099766 ACCAGTTCCATAGATCGGATGGTGTTACGTTCCACATGTCATATTGTAATTCTCCCTTAC 3099825 Query 47548 TTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTG 47607 || || || || | ||||||| ||| | || || |||||| | ||| |||||| Sbjct 3099826 TTGCAGGGGATCCCTCGTATGTTTCATATGTTCCTAATTCTTTAGCCAATTCGCAACTTC 3099885 Query 47608 CTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTG 47667 ||||| ||| || || || |||||||| |||| | ||| | || | |||||| | Sbjct 3099886 TCTCCAAAGCAGCATGGTAGATCGTTTCAAAGATTTGAACGTTCAATTTGCGTGCTTCGG 3099945 Query 47668 ATGATTCAAAAGG-ATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATA 47726 ||| || || || ||| |||| |||||| | || | || || ||| Sbjct 3099946 GTGAATCGAAGGGCATACCCAAGATCATG-AATGCATCTGCAAGACCGTTGACTCCGATA 3100004 Query 47727 CCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATA 47786 || || || | ||| | ||||| |||||| | ||| || | || ||| Sbjct 3100005 CCGATAGGACGGTGACGCATGTTAGATCTGCGTGCTTCTTCGACTGGGTAATAATTGATA 3100064 Query 47787 TCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAA 47846 || |||||||| || | ||| | | ||| || || ||| Sbjct 3100065 TCAATAATTTTGTTCAAGTTACCACAGATCACTTTGGCAACTGCGTGTAACTTCTTGAAA 3100124 Query 47847 TCAAACTTGTTATTTATAACA--AACCTA--TTA--AGTGCTATAGATGCTAGATTACAT 47900 ||| | | || || | ||| || || | || || || || | ||| || Sbjct 3100125 TCATAAGTCTTTGTTGCAGGGTCAACGTAGGTTGGCAAAGCAATCGAAGCCAAATTGCAC 3100184 Query 47901 ACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTG 47960 || || || |||| || | |||| || ||||| | || | ||| ||| Sbjct 3100185 ACGGCAACTTCATCAGGTGCACAGTATTCAATAATTTCTGTGCACAAGTTAGAGTTCTTG 3100244 Query 47961 ATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAA 48020 || ||||||||||| | || ||| | |||| ||| || ||||| | ||| || Sbjct 3100245 ATGGTACCCAAATTCTTTTGGTTACTTTTTCTGTTTGCTGCATCTTTGTACAACATGAAT 3100304 Query 48021 GGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCA-AACAGT----CCTAGC-C 48074 || | |||||||| | |||||||||| |||| | ||| ||| | | | | | Sbjct 3100305 GGGTTACCAGTTTCAGTTTGAGATTCAAGAATAGCATACCACAACTTTTGTGCTTTGATC 3100364 Query 48075 TTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCA 48134 || | ||| ||| ||| || |||||| || | || |||||||| Sbjct 3100365 TTCTTTACATATCTGCCTTGCTT------TTCGTAAGACTCGTAAAGTTTTTCAAATTCT 3100418 Query 48135 TCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCA 48194 || || || || | | || ||||| |||| || || |||||||| |||| || || Sbjct 3100419 TCACCGTAACAATCAGCCAAACCAGGGGATTCGTTGGGGCACATCAAGCACCATTCACCA 3100478 Query 48195 TCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATA-AATAAATCCCT 48253 | | || || | |||| || | ||||| ||||| ||||| ||| |||| || | Sbjct 3100479 TTTTGTTCAACACGCTTCATGAACAAGTCTGGAATCCATAGAGC-ATAGAATAGTTCACG 3100537 Query 48254 AGTTCTTAGTTCTTCATTGCCACTATTCCTTT---TAAGTTCAAGAAAGTCCATTATATC 48310 | | | |||||| || || ||| ||| ||| | |||||| || | | ||| Sbjct 3100538 TGCACGAACTTCTTCTTTTCCGTGATT--TTTGCGTAAATCCAAGAAT-TCAAACACATC 3100594 Query 48311 AGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATC 48370 | |||||||||||| | || | || | |||| |||| || |||||||||||||| Sbjct 3100595 TGAATGCCATGGTTCAACGTAAACGGCAAAAGCACCCGGTCTCTTGTTACCTCCTTGATC 3100654 Query 48371 TATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACC 48430 | ||| | ||||| ||||| | || | ||||| || || ||||| || | | || Sbjct 3100655 AACATAACGAGCAGTTGTGTTAAATACACGCAACATAGGTACGATACCGTTACTTGTTCC 3100714 Query 48431 ATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT-TGAAATACCTATAC 48489 || || || | ||| || ||| | | | || || ||| | ||| || |||| Sbjct 3100715 GTTTGTACCTGCAATGTATGATCCTGTTCCGCGAATGTTGTGAATGTTTAAT-CCGATAC 3100773 Query 48490 CACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATAC 48549 ||||||| | || || || | ||||| ||| || ||||||||||| || || || Sbjct 3100774 CACCTGCACTCTTGGAAATCATTGCACAAATTTTGAGTGTATCATAAATACCATCAATGG 3100833 Query 48550 TATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAAT 48609 ||||||| |||| | | || || |||||||| || ||| || | || Sbjct 3100834 AATCATCTTTCATGGAAACCAAGAAGCATGAGGACATTTGTGGTCTTGGAGTACCAGCAT 3100893 Query 48610 TAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAA 48669 | || | ||||| |||||||| |||| | || || || | || |||||||||| Sbjct 3100894 TGAAAAGGGTTGGTGATGCATGTGTAAAGTACTTTTCACTCAAAAGGTTGTATGTTTCAA 3100953 Query 48670 TAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAG 48729 | ||| ||| | ||| | || ||||| | | |||||||| ||||||| ||| | Sbjct 3100954 TTGCAGCATCAACATCTTCTCCGTGAATACCAACGGCAACACGCATCAACATATGTTGTG 3101013 Query 48730 GTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAAC 48789 |||||||| ||| ||| ||| || |||||| |||||| ||| | || || |||| Sbjct 3101014 GTCTTTCAGCAACTTTTCCATTGATACGCAAAAGGTATGATCGTTCTAGGGTCTTGAAAC 3101073 Query 48790 CAAAATAGTTGTA-TGAAAAGTCGTTATCATTAATAATTG 48828 |||| |||| || || ||| || ||||| ||| |||| Sbjct 3101074 CAAAGAAGTTATAGTGGAAA-TCACGATCATAAATGATTG 3101112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108392471120