Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1 205 7e-47 seq4 114 1e-19 seq3 104 2e-16 seq2 96.9 3e-14 >seq1 Length=6968282 Score = 205 bits (226), Expect = 7e-47 Identities = 385/559 (69%), Gaps = 19/559 (3%) Strand=Plus/Plus Query 549977 ATGTCAAACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTT 550036 |||||| |||| |||| | ||||| ||||| || || || || ||||||| ||| Sbjct 1554545 ATGTCAG-CAAA--AGCTGTCGGTATTGATTTGGGTACAACCTACTCATGTGTTGCCGTT 1554601 Query 550037 TGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCT 550096 |||||||||| |||||| | |||||||| |||||||||||| | || || ||||| Sbjct 1554602 TGGCAAAATGACCGTGTTGAAGTCATTGCCAACGATCAAGGTAACCGCACAACACCATCA 1554661 Query 550097 TATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACT 550156 |||||| | ||||| || ||||||| ||| | |||||||| ||||| | |||| | | Sbjct 1554662 TATGTTGCATTCACAGACACTGAACGTTTGATCGGTGATGCCGCAAAGAACCAAGTCGCA 1554721 Query 550157 GGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGAT 550216 || ||| ||| || |||| || || |||||||| || ||| | | || ||||| Sbjct 1554722 ATGAACCCTCACAACACAGTTTTCGACGCAAAACGTTTGATCGGACGCAAATTCGATGAT 1554781 Query 550217 TCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTC------T 550270 | ||||| |||||||||| |||||||| ||| | || | |||| | Sbjct 1554782 GCTGAAGTTCAATCAGATATGAAACATTGGCCATTC---ACCGTCA---TTTCAAAAGAT 1554835 Query 550271 GGAAAACCTTATATTGAAG-CTACTCATGAAGGATCTGTTAAACA-ATTTTCACCAGAAC 550328 || || || ||| ||| | | | |||| | ||| | || |||| ||| Sbjct 1554836 GGCAAGCCAATCATTCAAGTCGAAT--ACAAGGGTGAACAAAAGACCTTCACACCCGAAG 1554893 Query 550329 AAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAG 550388 |||| || ||||||||||| | || ||| |||| || |||| | ||| | Sbjct 1554894 AAATCTCTTCTATGGTTTTGCTAAAGATGCGCGAAACTGCTGAAGCTTACTTAGGTGGAA 1554953 Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 || | |||||| || | ||||| || ||||| || || ||||| ||||||||||| | Sbjct 1554954 GCGTCAAGGATGCCGTTGTCACTGTTCCCGCATACTTCAACGACTCTCAACGTCAAGCAA 1555013 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | |||||||| || ||| |||| | || ||| | ||||| ||||| || || || | Sbjct 1555014 CCAAAGATGCCGGTGTTATCTCTGGTTTGAACGTTATGCGTATCATCAACGAGCCAACCG 1555073 Query 550509 CTGCTGCACTTGCATATGG 550527 ||||||| ||||||| || Sbjct 1555074 CTGCTGCTATTGCATACGG 1555092 Score = 149 bits (164), Expect = 5e-30 Identities = 322/480 (67%), Gaps = 4/480 (1%) Strand=Plus/Plus Query 549984 ACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAA 550043 || ||| || || ||||| ||||| || ||||| || |||||||||| ||| | Sbjct 845202 ACCAAGGTGCCATCGGTATCGATTTGGGTACCACTTACTCTTGTGTTGGTTGGTGGACCA 845261 Query 550044 ATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTT 550103 | | || ||||| ||||||||||| ||||||||| | || || || ||||| || Sbjct 845262 ACGAACGTGTGGAAATCATTGCCAATGACCAAGGTAACCGTACCACACCTTCTTACGTCG 845321 Query 550104 CTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATC 550163 ||||||| ||| |||||| ||| |||||||||| ||||| | ||||| | || | Sbjct 845322 CTTTCACCGAATCTGAACGTTTGATTGGTGATGCCGCAAAGAACCAAGCTGCCATGAACC 845381 Query 550164 CTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTG 550223 || | || |||| |||||||||||||| || ||| | ||||| |||| | | Sbjct 845382 CTCGTCAAACCGTTTTCGATGCTAAACGTTTGATCGGACGTCGTTTTGATGACCCAGAAG 845441 Query 550224 TTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATA 550283 | || |||||||| | ||||||||| | ||| | |||| || | | Sbjct 845442 TCAAGAAAGATATGACCAACTGGCCTTTCACCGTCGTTGACAAAGAAGGAAGTCCATTCA 845501 Query 550284 TTGAAGCT--ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTAT 550341 |||||| | | | || || | || ||||| || || || |||| || |||| Sbjct 845502 TTGAAGTTGAATACTTGGGTGAAAAG--AAGCAATTCTCTCCTCAAGAAATCTCTGCTAT 845559 Query 550342 GGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGC 550401 |||||| | || ||||| ||| ||| || | ||| ||||||||| | | || Sbjct 845560 GGTTTTGACCAAGATGAAGGAAATTGCCGAAGCAAAGATCGGTAAAGAAGTTAAGAAGGC 845619 Query 550402 AGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGG 550461 ||| | || || || ||||| || || ||||| |||||| || || || ||||| || Sbjct 845620 AGTTGTCACAGTTCCCGCATACTTCAACGACTCTCAACGTTTGGCAACCAAGGATGCAGG 845679 Score = 141 bits (156), Expect = 7e-28 Identities = 360/541 (67%), Gaps = 14/541 (3%) Strand=Plus/Minus Query 549994 TATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGT 550053 ||| ||||| ||||| || || |||||| ||||| |||||| | || ||| || Sbjct 6932310 TATCGGTATTGATTTGGGTACAACATATTCATGTGTCGGTGTTCAACGTAAAGGTCGTGT 6932251 Query 550054 TGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113 ||||||||||| || ||||||||||| | | ||||| |||| || ||||| || Sbjct 6932250 AGAAATTATTGCAAACGATCAAGGTAATCGTATCACTCCTTCTTGGGTCGCTTTCGGTGA 6932191 Query 550114 AACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATAC 550173 ||||| |||| ||||||| || ||||| ||||||| | ||||| ||| Sbjct 6932190 TGATGAACGTTTAATTGGTGACGCTGCAAAGAATCAAGCTGCACAAAATCCAGAACGTAC 6932131 Query 550174 TATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGA 550233 || |||||||| || ||||||||||| | | || ||| | ||| || ||| Sbjct 6932130 AATCTTTGATGCCAAGCGTTTAATTGGTCGTGCATGGAACGATCCTGATGTCAAGAAAGA 6932071 Query 550234 TATGAAGCATTGGCCTTTCCAAATTGTT-AATGTTTCTGGAAAACCT------TATATTG 550286 | || | || ||| || | ||| || | | |||||| || | | ||| Sbjct 6932070 TGCTCGTCACTTCCCCTTCAAATTGGTTGAACGGGAC-GGAAAAGCTGCTATCTCTGTTG 6932012 Query 550287 AAGCTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTT 550346 ||| | | | |||| | | || || ||| | || ||| |||| || | ||||| | Sbjct 6932011 AAG-TTCGC-GGAAGTACCCGT---AC-ATTCACTCCTGAAGAAATCTCTGCCATGGTCT 6931958 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAA 550406 | || |||||| ||||||| |||| | | || || | || || | || || Sbjct 6931957 TGCAAAAGATGAAAGAAACAGCAGAAGCTTATTTAGGCCACAAGGTCACTCACGCCGTTG 6931898 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | || || |||||||| || |||||| | ||||||||||| || || ||||| || | Sbjct 6931897 TTACCGTTCCAGCATACTTCAATGACGCCCAACGTCAAGCCACAAAGGATGCAGGTACAA 6931838 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 |||| || | | ||| | ||||| |||| ||||| || ||||| ||| ||||||| | Sbjct 6931837 TTGCCGGTTTGACCGTTTTGCGTATCGTCAACGAACCCACAGCTGCAGCAATTGCATACG 6931778 Query 550527 G 550527 | Sbjct 6931777 G 6931777 Score = 98.7 bits (108), Expect = 8e-15 Identities = 138/190 (73%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 563286 TTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAAT 563345 ||||| || ||||||||||| | ||| | |||||| | ||| || || ||||| || Sbjct 5661022 TTTGG--ATGTTGTAATCAGCCAAAGTACGCCCATCTTCCAATTGCTTACCAGCAAAGAT 5661079 Query 563346 AAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTC 563405 | | ||| || || || ||||| ||||| || |||||||| ||| || || || Sbjct 5661080 TAAACGTTGTTGGTCTGGTGGAATACCTTCCTTGTCTTGAATCTTTGCCTTAACATTGTC 5661139 Query 563406 AATTGTATCAGTGTGAGT-ACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGA 563464 ||| ||||| || ||| | | ||||| || | |||||||| ||||| ||||| || | Sbjct 5661140 AATAGTATC-GTTTGATTCAACCTCGAGGGTGATTGTTTTACCCGTAAGGGTTTTTACAA 5661198 Query 563465 AAATTTGCAT 563474 |||||||||| Sbjct 5661199 AAATTTGCAT 5661208 Score = 96.9 bits (106), Expect = 3e-14 Identities = 158/223 (71%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 |||||| | ||| | ||| | ||| ||| | ||||| || ||||| ||||| | || Sbjct 6898247 GAGACGCAATACCAAATGTAAGGTGGACTCTTTTTGG--ATGTTGTAGTCAGCCAATGTG 6898190 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | | ||||| | ||| || || || ||||| || | ||| || || || ||||| ||| Sbjct 6898189 CGTCCGTCTTCCAATTGCTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGAATACCT 6898130 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAG 563432 ||||| ||||| || || ||| || |||||||||||| || | || ||| || Sbjct 6898129 TCTTTGTCTTGGATCTTGGCTTTGACATTATCAATTGTATCACTGCTTTCGAC-TTCTAG 6898071 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || | || ||||||||||| || || || || ||||||||| Sbjct 6898070 TGTGATTGTCTTACCAGTAAGTGTCTTGACAAAGATTTGCATA 6898028 >seq4 Length=1961900 Score = 114 bits (126), Expect = 1e-19 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 399569 ATATGACAAGGAGGTAATGCCAtttttttAATGTCGACAGGATTCCATAAACTTATAATT 399628 ||||||||||| ||||||||||| ||| | | || | ||||||||| ||| | |||| Sbjct 1780377 ATATGACAAGGTGGTAATGCCATCTTTGTTAAATCTGCCGGATTCCATGCACTCAAAATT 1780436 Query 399629 ATTCTGCGATCATTTGGATTATTCATAATAGCATCAATACAATTAT-TTAATTGATCAAT 399687 ||||| ||||| |||||||||| |||| |||||| || || | |||||||||||| Sbjct 1780437 ATTCTTCGATCTGTTGGATTATTTTTAATTTTATCAAT-CACTTCTCTTAATTGATCAAC 1780495 Query 399688 TCCTTGATCATG-ATAATCTGTTTTACAATTATCATATTTGGCTCCGAAATGTCTCATTT 399746 ||||| || || |||||| | || | | |||| ||||| ||||||||| || Sbjct 1780496 ACCTTG-TCCTGTATAATCATCATCGCACGTTTTGTATTCTGCTCCAAAATGTCTCCATT 1780554 Query 399747 GAAATCCATAACCGGGGCCAATATCTCCCGC 399777 |||| || || | || || | ||| || || Sbjct 1780555 GAAAGCCGTATACTGGTCCTAGATCACCTGC 1780585 >seq3 Length=3165745 Score = 104 bits (114), Expect = 2e-16 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 563266 ACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCA 563325 || |||||||| || |||||||| ||| |||||||| || | || | | ||||| Sbjct 2529668 ACGAGATGAAGAGTGCTTTCTTTTTGAATGTTGTAATCGGCCAATGTACGTCCGTCTTCT 2529609 Query 563326 AGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGA 563385 | |||||| || ||||| || | | ||| || || || ||||| ||||||||||| ||| Sbjct 2529608 AATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGTGGAATACCTTCTTTATCCTGA 2529549 Query 563386 ATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTT 563444 || || ||| || || |||||||||| ||| | || || | |||| |||||| Sbjct 2529548 ATCTTGGCTTTGACGTTATCGATTGTATCAG-ATGATTCCACCTCCAAGGTAATAGTTTT 2529490 Query 563445 ACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || || | || || || || ||||||||| Sbjct 2529489 TCCCGTCAATGTCTTGACAAAGATTTGCATA 2529459 Score = 89.7 bits (98), Expect = 4e-12 Identities = 151/214 (71%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 563266 ACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 || ||||| || || ||||| ||||| ||||||||||| || | || | ||||| Sbjct 2529440 ACGAGATGGAGTGTGCTTTCCTTTTGG--ATATTGTAATCGGCCAATGTACGACCATCTT 2529383 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 | | ||| || || ||||| ||||| | ||| ||||| || ||||| |||||||| |||| Sbjct 2529382 CCAATTGCTTACCAGCAAAGATAAGACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTT 2529323 Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGTAACAGTT 563442 |||| || || || ||||| ||||| | || | | || | ||| | || Sbjct 2529322 GAATCTTGGCCTTGACGTTGTCAATGGTATCCG-AAGATTCAACCTCCAAAGTGATCGTC 2529264 Query 563443 TTACCAGTAAGAGTTTTAACGAAAATTTGCATAG 563476 || || || | |||||| || || |||||||||| Sbjct 2529263 TTTCCGGTCAAAGTTTTTACAAAGATTTGCATAG 2529230 Score = 89.7 bits (98), Expect = 4e-12 Identities = 106/139 (76%), Gaps = 5/139 (4%) Strand=Plus/Plus Query 370653 GCAACTGATGATGAAATTAAAAAAGCATACAAAAAACTAGCAATGAAATATCATCCTGAT 370712 ||||| | || ||||||||||||||||| | ||| |||||||| |||| ||||||||| Sbjct 2787844 GCAACACAAGAAGAAATTAAAAAAGCATATAGAAAGCTAGCAATCAAATTACATCCTGAT 2787903 Query 370713 AGAAA--CAAAAG-TCCTGATGCTGAAGAAAAGTTTaaaaaaaTTAGCAATGCACATGGT 370769 | ||| |||| | |||||| | ||||||| ||||||| | | | |||| || Sbjct 2787904 AAAAATCCAAATGATCCTGAAGGAGAAGAAAGATTTAAAACACTCGCTACTGCATAT-CA 2787962 Query 370770 ATTCTT-TCTGATCCTGAA 370787 | |||| |||||||||||| Sbjct 2787963 AGTCTTATCTGATCCTGAA 2787981 >seq2 Length=3834998 Score = 96.9 bits (106), Expect = 3e-14 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| || || || ||||| ||||| ||||||||||| || || ||||| Sbjct 3374081 GCCGTCATTACTGTCCCTGCTTACTTTAACGACTCTCAACGTCAAGCAACAAAGGATGCA 3374022 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || ||||| || | | ||||| ||| |||| || ||||| ||||| ||||| ||| Sbjct 3374021 GGTACAATTGCCGGTTTGGACGTTCTCCGTGTTATTAACGAACCAACTGCCGCTGCTCTT 3373962 Query 550520 GCATATGGACTTGATAAA 550537 || || || ||||| ||| Sbjct 3373961 GCTTACGGTCTTGACAAA 3373944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029292932698420