Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq3 113 3e-20 seq1 107 1e-18 >seq3 Length=3165745 Score = 113 bits (124), Expect = 3e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 ||| || | ||| || ||||| || ||||| ||||||||||| | | | ||| | || Sbjct 2529444 CAAAACGAGATGGAGTGTGCTTTCCTTTTGGATATTGTAATCGGCCAATGTACGACCATC 2529385 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 ||||| |||||||| ||||| || || || |||||||| | |||| || || ||||| Sbjct 2529384 TTCCAATTGCTTACCAGCAAAGATAAGACGTTGTTGATCTGGTGGAATACCTTCTTTGTC 2529325 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 |||||| || || | | | || || | || ||||||| || ||||| Sbjct 2529324 TTGAATCTTGGCCTTGACGTTGTCAATGGTATCCGAAGATTCAACCTCCAAAGTGATCGT 2529265 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 ||||| ||||||||||||||||| || ||||| ||| Sbjct 2529264 CTTTCCGGTCAAAGTTTTTACAAAGATTTGCATAGTG 2529228 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 ||||| || | ||| || ||||| ||||||||||| |||||||| | | | || || Sbjct 2529674 CGCAAAACGAGATGAAGAGTGCTTTCTTTTTGAATGTTGTAATCGGCCAATGTACGTCCG 2529615 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || || || || ||||| ||||| |||| || ||||| || | |||| || || || Sbjct 2529614 TCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGTGGAATACCTTCTTTA 2529555 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || |||||| ||| || | | | | || || | |||||||||| ||||| Sbjct 2529554 TCCTGAATCTTGGCTTTGACGTTATCGATTGTATCAGATGATTCCACCTCCAAGGTAATA 2529495 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||||||||||| || || ||||| || ||||| Sbjct 2529494 GTTTTTCCCGTCAATGTCTTGACAAAGATTTGCAT 2529460 >seq1 Length=6968282 Score = 107 bits (118), Expect = 1e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || || ||| ||| ||||| || ||||| |||| | | | ||| Sbjct 6897790 AGACGCAACACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGCCAAAGTGCGA 6897731 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||| |||||||||||||| |||| || ||||| || | || | || || Sbjct 6897730 CCGTCTTCCAATTGCTTACCGGCAAAGATCAATCTTTGTTGGTCTGGTGGGATACCTTCT 6897671 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| ||| ||| | | || || || | || ||||| | ||| Sbjct 6897670 TTGTCTTGGATCTTGGCTTTGACATTGTCAATAGTATCAGAGGATTCAACCTCAAGGGTA 6897611 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || || || ||||| || || ||||| || |||||| Sbjct 6897610 ATTGTCTTACCAGTCAAGGTCTTGACAAAGATTTGCATC 6897572 Score = 95.1 bits (104), Expect = 9e-15 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| ||||| || | ||| || ||||| || |||||||||| | | | || Sbjct 5660991 AGACGCAAGACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAATCAGCCAAAGTACGC 5661050 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| |||||||| ||||| || | || ||||| || | |||| || ||| Sbjct 5661051 CCATCTTCCAATTGCTTACCAGCAAAGATTAAACGTTGTTGGTCTGGTGGAATACCTTCC 5661110 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||||| || ||| | | || || | || ||||| | || Sbjct 5661111 TTGTCTTGAATCTTTGCCTTAACATTGTCAATAGTATCGTTTGATTCAACCTCGAGGGTG 5661170 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || ||||| ||||| | |||||||||||||| ||||| ||| Sbjct 5661171 ATTGTTTTACCCGTAAGGGTTTTTACAAAAATTTGCATGGTG 5661212 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || | || || ||||| || |||||||||| | | | || Sbjct 6898474 AGACGCAACACCAAGTGCAAGGTAGATTCCTTTTGGATGTTGTAATCAGCCAAAGTACGG 6898415 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||| || ||||| ||||| |||| || ||||| || | || | || || Sbjct 6898414 CCGTCTTCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCTGGCGGGATACCTTCT 6898355 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| ||| ||| | | | || || | || || |||| || Sbjct 6898354 TTGTCTTGAATCTTGGCTTTGACATTGTCAATCGTGTCGGAAGATTCAACTTCCAATGTG 6898295 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| ||||| ||||| ||||| ||||| || ||||| Sbjct 6898294 ATCGTCTTTCCTGTCAATGTTTTGACAAAGATTTGCAT 6898257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937330724734