Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq1 102 7e-17 seq3 95.1 1e-14 >seq1 Length=6968282 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| |||||||| || || || || || || ||| ||| |||| Sbjct 6898257 ATGCAAATCTTTGTCAAAACATTGACAGGAAAGACGATCACATTGGAAGTTGAATCTTCC 6898316 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || ||| | | | || |||| || || | || |||||||| || | || ||| || Sbjct 6898317 GACACGATTGACAATGTCAAAGCCAAGATTCAA-GACAAAGAAGGTATCCCGCCAGACCA 6898375 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | | |||||||| || |||||||||||||| ||| |||| ||||| || Sbjct 6898376 ACAACGTTTGATCTTTGCAGGTAAACAATTGGAAGACGGCCGTACTTTGGCTGATTACAA 6898435 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 ||| ||||| |||||||| ||||| |||| || Sbjct 6898436 CATCCAAAAGGAATCTACCTTGCACTTGGTGTT 6898468 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||||||||| | ||||||||||| || ||| ||| ||| | Sbjct 5661208 ATGCAAATTTTTGTAAAAACCCTTACGGGTAAAACAATCACCCTCGAGGTTGAATCAAAC 5661149 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | ||| ||| || ||||| || || | || ||| ||| Sbjct 5661148 GATACTATTGACAATGTTAAGGCAAAGATTCAAGACAAGGAAGGTATTCCACCAGACCAA 5661089 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | | |||||||| || || |||||||||||| ||| |||| ||||| ||| Sbjct 5661088 CAACGTTTAATCTTTGCTGGTAAGCAATTGGAAGATGGGCGTACTTTGGCTGATTACAAC 5661029 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 || ||||| ||||| || ||||| |||| || Sbjct 5661028 ATCCAAAAGGAATCCACCTTGCACTTGGTCTT 5660997 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || || || ||||| || |||||| || ||| | || Sbjct 6897573 ATGCAAATCTTTGTCAAGACCTTGACTGGTAAGACAATTACCCTTGAGGTTGAATCCTCT 6897632 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || |||| || ||| |||||||| || | || ||| ||| Sbjct 6897633 GATACTATTGACAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 6897692 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||| | |||||||| || || ||||||||||| | ||| |||| || || ||| Sbjct 6897693 CAAAGATTGATCTTTGCCGGTAAGCAATTGGAAGACGGTCGCACTTTGGCTGACTACAAC 6897752 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 || ||||| || || || || ||| |||| || Sbjct 6897753 ATCCAAAAGGAGTCCACACTTCACTTGGTGTT 6897784 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 ||||| || ||| | || ||| ||||| | | |||||||| || || ||||||||| Sbjct 595419 GACAAGGAAGGAATTCCACCAGACCAACAACGTTTGATCTTTGCTGGAAAGCAATTGGAA 595478 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||| | |||| |||| ||||| ||||| ||||| ||||||||| ||||| |||| Sbjct 595479 GATGGCAGAACTTTGGCTGATTACAACATCCAAAAGGAATCTACTTTGCACTTGGT 595534 >seq3 Length=3165745 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||||||||| || || || || || || || || ||| |||| Sbjct 2529232 ATGCAAATCTTTGTAAAAACTTTGACCGGAAAGACGATCACTTTGGAGGTTGAATCTTCG 2529291 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | ||||| || || |||||||| || | || ||||||| Sbjct 2529292 GATACCATTGACAACGTCAAGGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGATCAA 2529351 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | ||||||||||| || || |||||||||||| | || |||||||||| || Sbjct 2529352 CAACGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGTACATTGGCCGATTACAAT 2529411 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||| ||| || || || | || || |||||||| || || || Sbjct 2529412 ATCCAAAAGGAAAGCACACTCCATCTCGTTTTGAGATTACGTGGTGGTAT 2529461 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || ||||| ||||| ||||| |||||| || |||| | || Sbjct 2529460 ATGCAAATCTTTGTCAAGACATTGACGGGAAAAACTATTACCTTGGAGGTGGAATCATCT 2529519 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | |||| || || | || || ||||| || | || ||| || Sbjct 2529520 GATACAATCGATAACGTCAAAGCCAAGATTCAG-GATAAAGAAGGTATTCCACCAGACCA 2529578 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | | |||||||| || |||||||| ||||| || |||||||||| || Sbjct 2529579 ACAACGTTTGATCTTTGCTGGTAAACAATTAGAAGACGGACGTACATTGGCCGATTACAA 2529638 Query 28733 CATTCAAAAAGAATCTACTCTGCA 28756 ||||||||||||| ||||| || Sbjct 2529639 CATTCAAAAAGAAAGCACTCTTCA 2529662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425404499291982