Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq2 143 1e-29 >seq2 Length=3834998 Score = 143 bits (158), Expect = 1e-29 Identities = 330/492 (67%), Gaps = 14/492 (3%) Strand=Plus/Plus Query 25906 CCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAA 25965 ||| ||| ||||||| ||||| || ||| || || ||||||||||| | ||||| || Sbjct 3100469 CCATTCACCATTTTGTTCAACACGCTTCATGAACAAGTCTGGAATCCATAGAGCATAGAA 3100528 Query 25966 TAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAA 26025 || || | || | | |||||||||||||||||| || || ||| ||||| ||||| Sbjct 3100529 TAGTTCACGTGCACGAACTTCTTCTTTTCCGTGATTTTTGCGTAAATCCAAGAATTCAAA 3100588 Query 26026 AATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACC 26085 | |||||| ||||||||||| | || | |||||| ||| ||| || || || Sbjct 3100589 CACATCTGAATGCCATGGTTCAACGTAAACGGCAAAAGCACCCGGTCTCTTGTTACCTCC 3100648 Query 26086 TTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCC---AGT 26142 |||||| || || | |||||| || || || |||||| || || | || | | Sbjct 3100649 TTGATCAACATAACGAGCAGTTGTGTTAAATACACGCAACATAGGTACGATACCGTTACT 3100708 Query 26143 TGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAAT 26202 || ||||||||| | ||| | |||||||| | ||| | |||| ||| | Sbjct 3100709 TG---TTCCGTTTGTACCTGCAATGTATGATCCTGTTCCGCGAATGTTGTGA--ATGTTT 3100763 Query 26203 A--CCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATT 26260 | ||||| ||||| || | || ||||| ||||||| | | |||||| |||| Sbjct 3100764 AATCCGATACCACCTGCACTCTTGGAAATCATTGCACAAATTTTGAGTGTATCATAAATA 3100823 Query 26261 CCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTT 26320 || | ||| |||| ||||||| | || || || || || | ||| | | Sbjct 3100824 CCATCAATGGAATCATCTTTCATGGAAACCAAGAAGCATGAGGACATTTGTGGTCTTGGA 3100883 Query 26321 GTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCCTTCACTCAAA--GCTG 26378 || || | ||| || | || |||| ||||| ||| | || |||||||||| | || Sbjct 3100884 GTACCAGCATTGAAAAGGGTTGGTGATGCATGTGTAAAGTACTTTTCACTCAAAAGGTTG 3100943 Query 26379 TATAAGTTTCAA 26390 ||| ||||||| Sbjct 3100944 TAT--GTTTCAA 3100953 Score = 84.2 bits (92), Expect = 1e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 25016 AATTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCA 25075 |||||||| | || || | ||| | | | |||||| ||||| |||||||| |||||| Sbjct 3099609 AATTCTCCTGCTAACACACGCCTTGTGTAGATGTTTGAGGTGAAAGGTTCAAAGCATTCA 3099668 Query 25076 TTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATTT 25135 || |||||| |||||| ||||| || || ||||| ||| | ||||||||||| Sbjct 3099669 TTGAATCCTAAAATTTGACTGGTAGAAGCAGTAGGCATGGGTGCCAACAATAGCGAATTA 3099728 Query 25136 CTCAAACCATATTTAACAATCTCTTGTTTTAATT 25169 | ||||| | | |||||| || ||||| || Sbjct 3099729 CGTAAACCGTGCTCTGCAATCTTTTCTTTTAGTT 3099762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039821132350