Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2 221 1e-52 >seq2 Length=3834998 Score = 221 bits (244), Expect = 1e-52 Identities = 1072/1669 (64%), Gaps = 67/1669 (4%) Strand=Plus/Minus Query 75206 GAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGAT 75265 |||| ||||| | ||||| ||||| || || | || || ||||| ||||| ||||| Sbjct 3101020 GAAAGACCACAACATATGTTGATGCGTGTTGCCGTTGGTATTCACGGAGAAGATGTTGAT 3100961 Query 75266 TCTGTCTTGGAGACATACGACAAGATGTCCCAAG-GTATGTTCATTCACGCAACACCAAC 75324 ||| | || |||||| || || || ||| || | || ||| ||||||| Sbjct 3100960 GCTGCAATTGAAACATACAACCTTTTGAGTGAAAAGTACTTT-ACACATGCATCACCAAC 3100902 Query 75325 CCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAA 75384 ||| |||||||||||||| |||||||| || |||||| |||||| | | ||| || Sbjct 3100901 CCTTTTCAATGCTGGTACTCCAAGACCACAAATGTCCTCATGCTTCTTGGTTTCCATGAA 3100842 Query 75385 GGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAAG 75442 || || || || | ||||| |||| || || | | | || |||| || || ||| Sbjct 3100841 AGATGATTCCATTGATGGTATTTATGATACACTCAA--AATTTGTGCAATGATTTCCAAG 3100784 Query 75443 TGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGG 75502 | || || ||||| || | |||| || | | | | | ||| ||| Sbjct 3100783 AGTGCAGGTGGTATCGGATTAAACATTCACAACATTCGCGGAACAGGATCATACATTGCA 3100724 Query 75503 GGGACAAATGGT-CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGC 75561 || ||||| || ||| | | ||||| | || ||| | || ||||||||| | || || Sbjct 3100723 GGTACAAACGGAACAAGTA-ACGGTATCGTACCTATGTTGCGTGTATTTAACACAACTGC 3100665 Query 75562 GCGCTATGTAAATCAAGCGGGGCGTCGCAAG-----GGGTCCATC-GCGGTCTACTTGGA 75615 || ||||| |||||| || | |||| |||| | | || || ||| | || Sbjct 3100664 TCGTTATGTTGATCAAGGAGG---TAACAAGAGACCGGGTGCTTTTGCCGTTTACGTTGA 3100608 Query 75616 ACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGA 75675 |||||||||| | ||| | | || ||| | || ||||| || || || | ||||| Sbjct 3100607 ACCATGGCATTCAGATGTGTTTGAATTCTTGGATTTACGCAAAAATCACGGAAAAGAAGA 3100548 Query 75676 GGCTCGGTGTA-GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGG 75734 | ||| || | | || || || | | || |||||||||||| | ||||||||||| | Sbjct 3100547 AGTTCG-TGCACGTGAACTATTCTATGCTCTATGGATTCCAGACTTGTTCATGAAGCGTG 3100489 Query 75735 TTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACG 75794 |||| | |||| |||||| | | || || || | | || ||| | | || Sbjct 3100488 TTGAACAAAATGGTGAATGGTGCTTGATGTGCCCCAACGAATCCCCTGGTTTGGCTGATT 3100429 Query 75795 CGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATG 75854 ||||| || |||||| || ||| || ||| || | || ||| ||| Sbjct 3100428 GTTACGGTGAAGAATTTGAAAAACTTTACGAGTCTTACGAAAAGCAAGGCAGAT---ATG 3100372 Query 75855 CGACT--GTACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTG 75911 | | | | | | | ||| ||| | |||||||| |||| || || || |||| Sbjct 3100371 TAAAGAAGATCAAAGCACAAAAGTTGTGGTATGCTATTCTTGAATCTCAAACTGAAACTG 3100312 Query 75912 GAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGG 75971 | | |||| ||| | ||||| ||||| |||| || ||||||||||||||||||| Sbjct 3100311 GTAACCCATTCATGTTGTACAAAGATGCAGCAAACAGAAAAAGTAACCAAAAGAATTTGG 3100252 Query 75972 GAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGA 76031 | || ||||||| ||| || | ||||| |||||| | || ||| | ||||| Sbjct 3100251 GTACCATCAAGAACTCTAACTTGTGCACAGAAATTATTGAATACTGTGCACCTGATGAAG 3100192 Query 76032 CGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCA 76091 || || ||||||||||| || || || | |||| || || | | || | Sbjct 3100191 TTGCCGTGTGCAATTTGGCTTCGATTGCTTTGCCAACCTACGTTGACCCTGCAACAAAGA 3100132 Query 76092 CTTTTGATTATGAAAAACTT-CATGAAATCACAAA---GAT-TGTTACCAAAAATCTAAA 76146 ||| ||||| | || || || || | | | | || ||| ||| || | || Sbjct 3100131 CTTATGATT-TCAAGAAGTTACACGCAGTTGCCAAAGTGATCTGTGGT----AACTTGAA 3100077 Query 76147 CCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACA 76206 | | | ||||| | |||| ||| || || || || || | ||||| ||||| || Sbjct 3100076 CAAAATTATTGATATCAATTATTACCCAGTCGAAGAAGCACGCAGATCTAACATGCGTCA 3100017 Query 76207 CAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGC 76266 | | ||||| ||| | || || | ||||| || |||| ||| || | | | || || Sbjct 3100016 CCGTCCTATCGGTATCGGAGTCAACGGTCTTGCAGATGCATTCATGATCTTGGG-TATGC 3099958 Query 76267 ATTT-GATTCAGATGAAGCCAAGGAGAT-GAATGCTCGTATCTTTGAAACCATGTATCAC 76324 || |||||| ||||| | | | || ||| | || ||||||||||| || || || Sbjct 3099957 CCTTCGATTCACCCGAAGC-ACGCAAATTGAACGTTCAAATCTTTGAAACGATCTACCAT 3099899 Query 76325 GCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAG 76384 || | ||||| ||||| ||||||||| ||| ||| | ||||| |||| ||| Sbjct 3099898 GCTGCTTTGGAGAGAAGTTGCGAATTGGCTAAAGAATTAGGAACATATGAAACATACGAG 3099839 Query 76385 GGTTCTCCCGC--GTCCCAAGGGGTGCTT-CAGTTTGATATGTGGGAAGGTGAAACCAAG 76441 || || || || || ||||| || || | ||| |||||| || || | |||| Sbjct 3099838 GGATCCCCTGCAAGT---AAGGGAGAATTACAATATGACATGTGG-AACGTAACACCATC 3099783 Query 76442 CTCAACTACG--ACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACA 76499 | | ||| | ||||| || || || ||| || ||| | ||| | ||||| Sbjct 3099782 CG-ATCTATGGAACTGGTCTGAACTAAAAGAAAAGATTGCAGAGCACGGTTTACGTAATT 3099724 Query 76500 GTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAAT 76559 || ||| ||||||| ||||| || || || ||| ||||| || || ||||||| Sbjct 3099723 CGCTATTGTTGGCACCCATGCCTACTGCTTCTACCAGTCAAATTTTAGGATTCAATGAAT 3099664 Query 76560 GCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCA 76619 |||||||||| | ||| ||||||||||| || | | ||||| || || Sbjct 3099663 GCTTTGAACCTTTCACCTCAAACATCTACACAAGGCGTGTGTTAGCAGGAGAATTCCAAG 3099604 Query 76620 TTGTCAACAAGCACCTCGTCAATGACCT-CA-----AGAAGATTGGTCTCTGGTCCAAGG 76673 |||| ||| || | || || | || ||| | || || ||||| | Sbjct 3099603 TTGTTAAC-----CCATGGTTATTACGTACATTGGTGGAACA-AGGACTATGGTCAGAAA 3099550 Query 76674 ATATGAAGGA---TCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCC 76730 |||||| | |||| | | ||||| || |||||||| | ||| || | Sbjct 3099549 CAATGAAGAACAGAATCATTGCTCA---TGGTGGATCAATTCAAAACGTTCCAGGAATTC 3099493 Query 76731 CAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATTG 76790 ||||||||||||| | | ||| || || |||||||||| |||| |||||| Sbjct 3099492 CAGATGATATCAAAAGATTGTACAAGACCGTTTGGGAAATCAGTCAAAAAGCAATCATTG 3099433 Query 76791 ACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAA 76839 | ||||| || |||||||| |||||| |||||||||||| |||| Sbjct 3099432 ATATGGCAGCCGATCGTGGAGCATTCATTTGCCAAAGTCAAAGTTTGAA 3099384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569167487040