Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1 104 4e-17 seq3 95.1 2e-14 >seq1 Length=6968282 Score = 104 bits (114), Expect = 4e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || ||||| || || ||||| ||||| | ||||| || || || || ||||| || Sbjct 5661054 TCTTCCAATTGCTTACCAGCAAAGATTAAACGTTGTTGGTCTGGTGGAATACCTTCCTTG 5661113 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | || | ||| |||||||||| || ||||| || || || || Sbjct 5661114 TCTTGAATCTTTGCCTTAACATTGTCAATAGTATCGTTTGATTCAACCTCGAGGGTGATT 5661173 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || || ||||||||||| |||||||| Sbjct 5661174 GTTTTACCCGTAAGGGTTTTTACAAAAATTTGCAT 5661208 >seq3 Length=3165745 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || ||||| || || ||||| || | | |||||||| || || || |||||||| Sbjct 2529386 TCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGTTGATCTGGTGGAATACCTTCTTTG 2529327 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || |||| || | || ||| ||||| ||||| ||||| || | ||| || Sbjct 2529326 TCTTGAATCTTGGCCTTGACGTTGTCAATGGTATCCGAAGATTCAACCTCCAAAGTGATC 2529267 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || | ||||||||||| |||||||| Sbjct 2529266 GTCTTTCCGGTCAAAGTTTTTACAAAGATTTGCAT 2529232 Score = 91.5 bits (100), Expect = 3e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || ||||||||||| || ||||| || || | ||||| || || || || ||||||||| Sbjct 2529614 TCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGTGGAATACCTTCTTTA 2529555 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || |||| ||| | || || ||||| || || || || || | || ||| Sbjct 2529554 TCCTGAATCTTGGCTTTGACGTTATCGATTGTATCAGATGATTCCACCTCCAAGGTAATA 2529495 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || | || || ||||| |||||||| Sbjct 2529494 GTTTTTCCCGTCAATGTCTTGACAAAGATTTGCAT 2529460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899653747750560