Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2 170 3e-37 seq1 120 4e-22 seq3 109 8e-19 >seq2 Length=3834998 Score = 170 bits (188), Expect = 3e-37 Identities = 378/561 (67%), Gaps = 13/561 (2%) Strand=Plus/Minus Query 18152 AATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAAC 18211 || ||||| || ||||||||||||||||||||||||||| || ||||| || || Sbjct 1007763 AACAAACATGCGAAATCAGTGTGTAAACCTTCATCTCTGCTGATCAATTCATTGGAGAAT 1007704 Query 18212 GTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAA 18271 || || |||||||| | || | || || ||||| || || |||||| || | Sbjct 1007703 GTCAAACCGGGCATCAATCCACGCTTCTTGAGCCAGAAGATACTTGCGAATGAACCACTG 1007644 Query 18272 AAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTG 18331 ||||| ||||| |||||| || || || | || | ||||||||| || ||| Sbjct 1007643 AAGAAGATACCTTCAACGGCAGCAAAAGCGACCAAACGTTCAGCAAATGTGGCCCGCTTG 1007584 Query 18332 CTCAGTA-TCCATTTTTGTGCCCATTCT-CCTTNNNNNNNNATACACGGTATACTCTCTA 18389 |||| | |||| ||| ||||||| ||| |||| || || || | || | Sbjct 1007583 -TCAGAAATCCACTTTAGTGCCCAATCTGCCTTTGTTTTGACGACT-GGAATTGTTTCAA 1007526 Query 18390 TAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAG 18449 |||||| ||||| || || | | || || || || || || ||||||| Sbjct 1007525 TAGCATCGAACAAGAACTCGCGTTGATCAGGGTCACGGATGTATGTATCAATCAACAAAG 1007466 Query 18450 AATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCT 18509 | || |||| || || ||| ||||||| || || |||| ||| || |||| || | Sbjct 1007465 AGTAAGTTTCTGAGTGAATGTTTTCCATCATGATTTGGAAACCATAGAAGCATCTTGCTT 1007406 Query 18510 CGGGATATTGAA--TCTC-GCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGT 18566 | | ||||| |||| ||| |||| ||| ||||| || ||||| || ||||| | Sbjct 1007405 CTGCTGCTTGAACTTCTCCGCTG---AATCGTTCGACCAAGTTTTCATTGACGATACCAT 1007349 Query 18567 CAGCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGAT 18626 ||| || || || ||||||||||| | |||||||| ||| || || || | | Sbjct 1007348 CAGAAGCGGCAAAGAATGCCAAAACGTGAGAGATGAAATGACGTTCGTTGTCGTTCAACT 1007289 Query 18627 TGTT---CCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATG 18683 |||| ||| || | | |||||| || | ||||| ||||| | ||||| ||||| | Sbjct 1007288 TGTTGTCCCAATCGTGCAAATCTTTGGACAAATCAATCTCTTCTGCGGTCCAGAAAGAAG 1007229 Query 18684 ATTCGGCCTGTTTGTACATTT 18704 ||| || | ||||||||||| Sbjct 1007228 CTTCTGCTTTTTTGTACATTT 1007208 >seq1 Length=6968282 Score = 120 bits (132), Expect = 4e-22 Identities = 156/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || |||||||| || || ||||| | || || ||| ||| Sbjct 6897573 ATGCAAATCTTTGTCAAGACCTTGACTGGTAAGACAATTACCCTTGAGGTTGAATCCTCT 6897632 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || ||| || || ||||| |||||||| || || ||||| ||| Sbjct 6897633 GATACTATTGACAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 6897692 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | |||||||||||| | ||||| | ||||| | || || | Sbjct 6897693 CAAAGATTGATCTTTGCCGGTAAGCAATTGGAAGACGGTCGCACTTTGGCTGACTACA-- 6897750 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTT 156034 | ||||||| ||| | || ||||| || ||||| Sbjct 6897751 ACATCCAAAAGGAGTCCACACTTCACTTGGTGTT 6897784 Score = 109 bits (120), Expect = 8e-19 Identities = 138/189 (73%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||||||||| ||||| || || ||||| ||||| ||| ||| Sbjct 6898257 ATGCAAATCTTTGTCAAAACATTGACAGGAAAGACGATCACATTGGAAGTTGAATCTTCC 6898316 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| || || ||||| |||||||| || || ||||| ||| Sbjct 6898317 GACACGATTGACAATGTCAAAGCCAAGATTCAAGACAAAGAAGGTATCCCGCCAGACCAA 6898376 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||| | ||| ||||| || | ||||| | | ||||| | ||||| | Sbjct 6898377 CAACGTTTGATCTTTGCAGGTAAACAATTGGAAGACGGCCGTACTTTGGCTGATTACA-- 6898434 Query 156003 ATATCCAAA 156011 | ||||||| Sbjct 6898435 ACATCCAAA 6898443 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || ||| | || ||||| || || ||| ||||||||||| Sbjct 6897801 ATGCAAATTTTTGTCAAGACACTAACAGGAAAGACAATCACACTAGAAGTCGAAAGCAGC 6897860 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| ||| || || ||||| |||||||| || || ||||| ||| Sbjct 6897861 GACACTATTGAYAACGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 6897920 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 ||| | ||||| | ||| ||||| || | ||||| Sbjct 6897921 CAACGTTTGATCTTTGCAGGTAAACAATTGGAAGA 6897955 Score = 86.0 bits (94), Expect = 9e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || ||| | ||||| || || || ||| ||||||||||| | Sbjct 6898029 ATGCAAATCTTTGTCAAGACACTTACTGGTAAGACAATCACACTAGAAGTCGAAAGCAGT 6898088 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || ||| || || ||||| |||||||| || || ||||| ||| Sbjct 6898089 GATACAATTGATAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGACCAA 6898148 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 ||| | | |||| || |||||||| | ||||| Sbjct 6898149 CAACGTCTCATTTTCGCTGGTAAGCAATTGGAAGA 6898183 >seq3 Length=3165745 Score = 109 bits (120), Expect = 8e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || |||||||| |||||||||||||| || || || ||| ||| Sbjct 2529460 ATGCAAATCTTTGTCAAGACATTGACGGGAAAAACTATTACCTTGGAGGTGGAATCATCT 2529519 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||||| ||| || || || ||||||||||| || || ||||| ||| Sbjct 2529520 GATACAATCGATAACGTCAAAGCCAAGATTCAGGATAAAGAAGGTATTCCACCAGACCAA 2529579 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 ||| | ||||| | ||| ||||| || | ||||| Sbjct 2529580 CAACGTTTGATCTTTGCTGGTAAACAATTAGAAGA 2529614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871469392800