Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1 122 2e-22 seq3 116 7e-21 seq2 98.7 2e-15 >seq1 Length=6968282 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | |||||| || || || || || |||| || || ||| || ||||||| Sbjct 6898483 CCACCACGAAGACGCAACACCAAGTGCAAGGTAGATTCCTTTTGGATGTTGTAATCAGCC 6898424 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || || || | || |||||||||||||| |||||||| || | ||||| || || || Sbjct 6898423 AAAGTACGGCCGTCTTCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCTGGCGGG 6898364 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || |||||||| ||||| || || ||| ||||| || | || || ||||| ||| Sbjct 6898363 ATACCTTCTTTGTCTTGAATCTTGGCTTTGACATTGTCAATCGTGTCGGAAGATTCAACT 6898304 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | || || || || || || |||||||| | ||| || ||||| Sbjct 6898303 TCCAATGTGATCGTCTTTCCTGTCAATGTTTTGACAAAGATTTGCAT 6898257 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||||| || || || || || || | || || ||| || ||||||| Sbjct 5660981 ACCACCACGGAGACGCAAGACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAATCAGC 5661040 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || || |||| |||||||| ||||||||||||||||| | ||||| || ||||| Sbjct 5661041 CAAAGTACGCCCATCTTCCAATTGCTTACCAGCAAAGATTAAACGTTGTTGGTCTGGTGG 5661100 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| || ||||| || || || ||||| |||| ||| ||||| || Sbjct 5661101 AATACCTTCCTTGTCTTGAATCTTTGCCTTAACATTGTCAATAGTATCGTTTGATTCAAC 5661160 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || |||||||| || | ||||| | ||| || ||||| Sbjct 5661161 CTCGAGGGTGATTGTTTTACCCGTAAGGGTTTTTACAAAAATTTGCAT 5661208 Score = 114 bits (126), Expect = 3e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | || || || || || || | |||| ||||| || || |||||| Sbjct 6898030 ATACCACCACGGAGGCGCAAGACCAAGTGGAGTGTAGATTCTTTCTGAATGTTGTAATCA 6897971 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | ||||| ||| | || |||||||||||||| |||||||| || | ||||| || ||| Sbjct 6897970 GCCAATGTGCGTCCGTCTTCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCTGGT 6897911 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || || ||| || || |||| || ||| Sbjct 6897910 GGGATACCTTCTTTGTCTTGGATCTTGGCTTTGACGTTRTCAATAGTGTCGCTGCTTTCG 6897851 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||| || || || || || |||| ||| || | ||| || ||||| Sbjct 6897850 ACTTCTAGTGTGATTGTCTTTCCTGTTAGTGTCTTGACAAAAATTTGCAT 6897801 Score = 95.1 bits (104), Expect = 2e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387 || || || ||||||| || || ||| || ||||||| || |||| |||| ||| Sbjct 595534 ACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAATCAGCCAAAGTTCTGCCATCTTCC 595475 Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 ||||| || ||||||||||| || | ||||| || ||||| |||||||| || ||||| Sbjct 595474 AATTGCTTTCCAGCAAAGATCAAACGTTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGG 595415 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 || ||| || || || || | || || || || || || || || ||||| ||| Sbjct 595414 ATCTTAGCCTTGACGTTGTCGATTGTGTCGGATGACTCCACCTCAAGGGTGATGGTCTTA 595355 Query 192508 CCAGT 192512 || || Sbjct 595354 CCTGT 595350 >seq3 Length=3165745 Score = 116 bits (128), Expect = 7e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || ||||| | ||||| ||| | || || |||||||||||||||||||| || | Sbjct 2529641 ATGTTGTAATCGGCCAATGTACGTCCGTCTTCTAATTGTTTACCAGCAAAGATCAAACGT 2529582 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 ||||| || ||||| || ||||||||||| || || || ||| || ||| || | | Sbjct 2529581 TGTTGGTCTGGTGGAATACCTTCTTTATCCTGAATCTTGGCTTTGACGTTATCGATTGTA 2529522 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || ||||| || || | ||||| ||||| || || ||||| || | ||| || ||| Sbjct 2529521 TCAGATGATTCCACCTCCAAGGTAATAGTTTTTCCCGTCAATGTCTTGACAAAGATTTGC 2529462 Query 192535 AT 192536 || Sbjct 2529461 AT 2529460 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||| ||||| | ||||| || |||| |||||||| |||||||||||||| | | Sbjct 2529414 GATATTGTAATCGGCCAATGTACGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACG 2529355 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 |||||||| ||||| || |||||||| ||||| || || || || || || | Sbjct 2529354 TTGTTGATCTGGTGGAATACCTTCTTTGTCTTGAATCTTGGCCTTGACGTTGTCAATGGT 2529295 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || ||||| || || | ||| || || || || || || ||||| | ||| || || Sbjct 2529294 ATCCGAAGATTCAACCTCCAAAGTGATCGTCTTTCCGGTCAAAGTTTTTACAAAGATTTG 2529235 Query 192534 CAT 192536 ||| Sbjct 2529234 CAT 2529232 >seq2 Length=3834998 Score = 98.7 bits (108), Expect = 2e-15 Identities = 350/554 (63%), Gaps = 3/554 (1%) Strand=Plus/Minus Query 49821 AAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTT 49880 |||||||| |||||||| |||||||| || || || || |||||||| || || Sbjct 1007760 AAACATGCGAAATCAGTGTGTAAACCTTCATCTCTGCTGATCAATTCATTGGAGAATGTC 1007701 Query 49881 AATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAG 49940 || || ||||| ||||| | ||| || ||||| || || ||| || || | ||| Sbjct 1007700 AAACCGGGCATCAATCCACGCTTCTTGAGCCAGAAGATACTTGCGAATGAACCACTGAAG 1007641 Query 49941 AATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCT 50000 || ||||| || || ||||| || | | | | | |||| | | || Sbjct 1007640 AAGATACCTTCAACGGCAGCAAAAGCGACCAAACGTTCAGCAAATGTGGCCCGCTTGTCA 1007581 Query 50001 AATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCT 50060 | ||||| |||| ||||||||||| ||| |||||| || || |||| ||||| Sbjct 1007580 GAAATCCACTTTAGTGCCCAATCTGCCTTTGTTTTGACGACTGGAATTGTTTCAATAGCA 1007521 Query 50061 TTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATAC 50120 | || || | || || || || ||||| || Sbjct 1007520 TCGAACAAGAACTCGCGTTGATCAGGGTCACGGATGTATGTATCAATCAACAAAGAGTAA 1007461 Query 50121 ATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAA 50180 |||| || || | |||||| ||||| || ||| || ||||||||||| Sbjct 1007460 GTTTCTGAGTGAATGTTTTCCATCATGATTTGGAAACCATAGAAGCATCTTGCTTCTGCT 1007401 Query 50181 TACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCT 50240 |||||||| ||||||||| || || || ||| || ||||||||||| || Sbjct 1007400 GCTTGAACTTCTCCGCTGAATCGTTCGACCAAGTTTTCATTGACGATACCATCAGAAGCG 1007341 Query 50241 GCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAA---ATTTTCC 50297 || |||||||| ||||||| || ||||| ||| || || || || || ||| Sbjct 1007340 GCAAAGAATGCCAAAACGTGAGAGATGAAATGACGTTCGTTGTCGTTCAACTTGTTGTCC 1007281 Query 50298 CAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGAT 50357 ||| | | ||| || || ||||| | |||||| ||||| || || ||| | | | Sbjct 1007280 CAATCGTGCAAATCTTTGGACAAATCAATCTCTTCTGCGGTCCAGAAAGAAGCTTCTGCT 1007221 Query 50358 TTTTTATACATTTG 50371 ||||| |||||||| Sbjct 1007220 TTTTTGTACATTTG 1007207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984479268408300