Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq3 114 2e-20 seq1 113 8e-20 seq2 86.0 1e-11 >seq3 Length=3165745 Score = 114 bits (126), Expect = 2e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 171879 TCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAA 171938 ||||| ||| || ||||| | || | ||| |||| || ||||||||||||||||| Sbjct 2529650 TCTTTTTGAATGTTGTAATCGGCCAATGTACGTCCGTCTTCTAATTGTTTACCAGCAAAG 2529591 Query 171939 ATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 171998 || || | |||||||| ||||| || ||||||||||| || || || ||| || ||| Sbjct 2529590 ATCAAACGTTGTTGGTCTGGTGGAATACCTTCTTTATCCTGAATCTTGGCTTTGACGTTA 2529531 Query 171999 GTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATG 172058 || ||||| || ||||| || || | ||||| ||||| || || ||||| || | Sbjct 2529530 TCGATTGTATCAGATGATTCCACCTCCAAGGTAATAGTTTTTCCCGTCAATGTCTTGACA 2529471 Query 172059 AATATCTGCAT 172069 || || ||||| Sbjct 2529470 AAGATTTGCAT 2529460 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||| ||||| | || | || | || |||||||| ||||||||||| || | | Sbjct 2529413 ATATTGTAATCGGCCAATGTACGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGT 2529354 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 ||||| || ||||| || |||||||| ||||| || || || || || || ||| Sbjct 2529353 TGTTGATCTGGTGGAATACCTTCTTTGTCTTGAATCTTGGCCTTGACGTTGTCAATGGTA 2529294 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || ||||| || || | ||| || || || || || || ||||| | || || ||| Sbjct 2529293 TCCGAAGATTCAACCTCCAAAGTGATCGTCTTTCCGGTCAAAGTTTTTACAAAGATTTGC 2529234 Query 172068 AT 172069 || Sbjct 2529233 AT 2529232 >seq1 Length=6968282 Score = 113 bits (124), Expect = 8e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | ||| || || || || || || |||| || || || || ||||| | Sbjct 6898483 CCACCACGAAGACGCAACACCAAGTGCAAGGTAGATTCCTTTTGGATGTTGTAATCAGCC 6898424 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 |||| || |||| |||||||||||||| ||||| || || | |||||||| || || Sbjct 6898423 AAAGTACGGCCGTCTTCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCTGGCGGG 6898364 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || |||||||| ||||| || || ||| ||||| || || || || ||||| ||| Sbjct 6898363 ATACCTTCTTTGTCTTGAATCTTGGCTTTGACATTGTCAATCGTGTCGGAAGATTCAACT 6898304 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || | || || || || || || |||||||| | || || ||||| Sbjct 6898303 TCCAATGTGATCGTCTTTCCTGTCAATGTTTTGACAAAGATTTGCAT 6898257 Score = 111 bits (122), Expect = 3e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || || || || || | |||| ||||| ||| || ||||| Sbjct 6898030 ATACCACCACGGAGGCGCAAGACCAAGTGGAGTGTAGATTCTTTCTGAATGTTGTAATCA 6897971 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | ||| |||| |||||||||||||| ||||| || || | |||||||| ||| Sbjct 6897970 GCCAATGTGCGTCCGTCTTCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCTGGT 6897911 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| || || ||| || || ||||| || ||| Sbjct 6897910 GGGATACCTTCTTTGTCTTGGATCTTGGCTTTGACGTTRTCAATAGTGTCGCTGCTTTCG 6897851 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||||||| || || || || || |||| ||| || | || || ||||| Sbjct 6897850 ACTTCTAGTGTGATTGTCTTTCCTGTTAGTGTCTTGACAAAAATTTGCAT 6897801 Score = 100 bits (110), Expect = 5e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | || || || || || || || || | || || || || ||||| | Sbjct 5660981 ACCACCACGGAGACGCAAGACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAATCAGC 5661040 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 |||| || | || |||||||| ||||||||||| ||||| | |||||||| ||||| Sbjct 5661041 CAAAGTACGCCCATCTTCCAATTGCTTACCAGCAAAGATTAAACGTTGTTGGTCTGGTGG 5661100 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| || ||||| || || || ||||| |||||||| ||||| || Sbjct 5661101 AATACCTTCCTTGTCTTGAATCTTTGCCTTAACATTGTCAATAGTATCGTTTGATTCAAC 5661160 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || |||||||| || | ||||| | || || ||||| Sbjct 5661161 CTCGAGGGTGATTGTTTTACCCGTAAGGGTTTTTACAAAAATTTGCAT 5661208 >seq2 Length=3834998 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/206 (69%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 39471 CTTGCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATA 39530 |||||||||| |||||||| ||||||||| || || || ||| || ||| Sbjct 1007412 CTTGCTTCTGCTGCTTGAACTTCTCCGCTGAATCGTTCGACCAAGTTTTCATTGACGATA 1007353 Query 39531 CCATCAGATGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTT 39590 |||||||| || || |||||||| ||||| | || ||||| ||| || || || Sbjct 1007352 CCATCAGAAGCGGCAAAGAATGCCAAAACGTGAGAGATGAAATGACGTTCGTTGTCGTTC 1007293 Query 39591 AA---ATTTTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAA 39647 || || |||||| | | ||| || || ||||| | |||||| ||||| ||| Sbjct 1007292 AACTTGTTGTCCCAATCGTGCAAATCTTTGGACAAATCAATCTCTTCTGCGGTCCAGAAA 1007233 Query 39648 GATGCTACGGATTTTTTATACATTTG 39673 || ||| | | |||||| |||||||| Sbjct 1007232 GAAGCTTCTGCTTTTTTGTACATTTG 1007207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135343776400