Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2 185 3e-41 seq4 116 1e-20 seq3 98.7 3e-15 seq1 87.8 5e-12 >seq2 Length=3834998 Score = 185 bits (204), Expect = 3e-41 Identities = 585/901 (65%), Gaps = 23/901 (3%) Strand=Plus/Plus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 |||||| | ||| || ||||| |||||| |||||||||| || |||||||| ||||| Sbjct 3100208 GTATTCAATAATTTCTGTGCACAAGTTAGAGTTCTTGATGGTACCCAAATTCTTTTGGTT 3100267 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 | ||| ||||| ||||| ||||| | ||| ||||| | || || || | || | Sbjct 3100268 ACTTTTTCTGTTTGCTGCATCTTTGTACAACATGAATGGGTTACCAGTTTCAGTTTGAGA 3100327 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809 || ||||| ||| | | | || || || | ||| |||||||||| | Sbjct 3100328 TTCAAGAATAGCATACCACAACTTTTGTGCTTTGATCTTCTTTACATATCTGCCTTGCTT 3100387 Query 155810 CTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCA 155869 || || | || || || | || ||||||||||||||| || |||||| | Sbjct 3100388 TTCGTAAGACTCGTAAAGTTTTTCAAATTCTTCACCGTAACAATCAGCCAAACCAGGGGA 3100447 Query 155870 CTTATCGGGGCAAAACAGCGACCA-----AATTTTATTACCGATTACACGCTCCATAAAT 155924 | | |||||| | || |||| ||||| || ||||||| ||| || Sbjct 3100448 TTCGTTGGGGCACATCAAGCACCATTCACCATTTTGTT-----CAACACGCTTCATGAAC 3100502 Query 155925 ACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGA 155984 | || ||| | ||||||||| || || | ||| || || | |||||| Sbjct 3100503 AAGTCTGGAATCCATAGAGCATAGAATAGTTCACGTGCACGAACTTCTTCTTTTCCGTGA 3100562 Query 155985 TTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCA 156044 || || |||| || |||||||| | ||| | ||| ||| || | || | ||| Sbjct 3100563 TTTTTGCGTAAATCCAAGAATTCAAACACATCTGAATGCCATGGTTCAACGTAAACGGCA 3100622 Query 156045 AAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACA 156101 ||| ||| |||||| || || ||||| ||||| |||||||| | || || ||| Sbjct 3100623 AAAGCACCCGGTCTCTTGTTACCTCCTTGATCAACATAACGAGCAGTTGTGTTAAATACA 3100682 Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGAT 156161 | | |||||| | ||||| || || || || || || ||| | || || | | Sbjct 3100683 CGCAACATAGGTACGATACCGTTACTTGTTCCGTTTGTACCTGCAATGTATGATCCTGTT 3100742 Query 156162 GAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAAT--TTGAGCGC 156219 ||||| || ||||| | || ||| |||||||||| | || ||||| ||| | Sbjct 3100743 CCGCGAATGTTGTGAATGTTTAATCCGATACCACCTGCACTCTTGGAAATCATTGCACAA 3100802 Query 156220 ATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGC 156279 ||| || | |||| ||||||| ||||| |||||||||| ||| || | | ||| Sbjct 3100803 ATT--TTGAGTGTATCATAAATACCATCAATGGAATCATCTTTCATGGAAACCAAGAAGC 3100860 Query 156280 ACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAA 156339 | || | ||| |||| ||| || ||||| ||||| || || |||| |||||| ||| Sbjct 3100861 ATGAGGACATTTGTGGTCTTGGAGTACCAGCATTGAAAAGGGTTGGTGATGCATGTGTAA 3100920 Query 156340 AATACTTATTAGACATATAATCGTATGTCTCCTTAAT--CTTC-TCAAGATTAGACCCGT 156396 | ||||| | | || | | |||||| || ||| | | |||| || |||| Sbjct 3100921 AGTACTTTTCACTCAAAAGGTTGTATGTTTC---AATTGCAGCATCAACATCTTCTCCGT 3100977 Query 156397 GAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAA 156456 |||||| | | || | |||| ||||||| || || | || ||| ||||| | Sbjct 3100978 GAATACCAACGGCAACACGCATCAACATATGTTGTGGTCTTTCAGCAACTTTTCCATTGA 3101037 Query 156457 TTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCAC 156516 | |||| |||||||| ||||| || || || || || || | | | | | ||||||| Sbjct 3101038 TACGCAAAAGGTATGATCGTTCTAGGGTCTTGAAACCAAAGAAGTTATAGTGGAAATCAC 3101097 Query 156517 G 156517 | Sbjct 3101098 G 3101098 >seq4 Length=1961900 Score = 116 bits (128), Expect = 1e-20 Identities = 258/387 (67%), Gaps = 0/387 (0%) Strand=Plus/Minus Query 302490 GTCAATTCCGTCATCGCCGTAGGAATACTGAATGATTTTGTTCTTGTTATTTCTTACGGT 302549 ||| ||||| || || ||||| | | | ||||||| || ||| | ||| | ||| || Sbjct 1450396 GTCTATTCCATCTTCACCGTATGCAAATTGAATGACATTATTCGTAGAATTACGTACCGT 1450337 Query 302550 CATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACC 302609 ||||| | || ||||| ||||||| | |||| || | | ||||| ||||| Sbjct 1450336 TCCGTCATAGCAAACCATAACATCTTCCAAAGCTTTGACCAATCTTCTTTGAATGTAACC 1450277 Query 302610 AGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAA 302669 |||| || ||||| || ||||||||||| | ||| ||||||| ||||||||||||| Sbjct 1450276 AGTTTCAGCAGTTTTGACGGCTGTATCAATCAAACCTTCACGACCTGCCATAGCATGGAA 1450217 Query 302670 GAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTC 302729 ||| | |||| ||| || || | | | || |||| || || ||||||| || Sbjct 1450216 GAAGAATTCTTGTGGTGTAAGACCACGCAAGTATGAATTCTCCACAAATCCACGCGATTC 1450157 Query 302730 GGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGAT 302789 || | ||| ||||| |||||| |||| || | || | || |||| || Sbjct 1450156 TGGACTAAAGTCATCCTTGGAAAAGTGCGGCAAAGTACGGTGACGGAATCCAAATGGAAT 1450097 Query 302790 ACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATC 302849 | |||||| ||||| ||| || || | || | | ||| || ||||| || | Sbjct 1450096 TCTCTTTCCTTCAACAGACTGTTGACCTACACATGCAGACATTTGGGAAATGTTGATGAA 1450037 Query 302850 ACTGCCCTTGGAGCCAGCATTTACCAT 302876 | ||||| || |||||| | ||||| Sbjct 1450036 AGAACCCTTTGATCCAGCAATAACCAT 1450010 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/139 (76%), Gaps = 5/139 (4%) Strand=Plus/Minus Query 301815 AATTTCTTCAATACGGGGAACACCACGGGTTACGTTAG-ACTTGGACGCAACACCAGCAA 301873 |||||||| | ||||||||||||| | || || || ||||| | ||||||||| Sbjct 1451080 AATTTCTTTCAAACGGGGAACACCAAGCGTAACATTTTTACTTGAA----ACACCAGCAT 1451025 Query 301874 AGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCA 301933 ||||||||||||| || || | |||||| | ||||| ||||||||||| || |||| | Sbjct 1451024 AGTGGAAAGTATTTAGGGTCATTTGAGTGGCCGGCTCTCCAATACTTTGAGCTGCAAGCG 1450965 Query 301934 TACCAACCATTTCTCCTGG 301952 | || |||||| || || Sbjct 1450964 TTCCGCACATTTCACCAGG 1450946 Score = 87.8 bits (96), Expect = 5e-12 Identities = 197/290 (68%), Gaps = 12/290 (4%) Strand=Plus/Minus Query 380971 ATCTGGAATGGTAATGGTAGTCGTGAGTTTTTAGATTCCCGTGGTCTAACCAATA-ACGA 381029 || ||| |||| ||||| ||| || ||||| || || || || || ||| |||| Sbjct 1780645 ATTTGGGATGGCAATGGAAGTAAGGAATTTTTGGAATCACGAGGACTTGGGCATAGACGA 1780586 Query 381030 AGAAGATGACCTTGGTCCTATTTACGGATTTCAGTGGAGACATTTTAACGCCGATTATGA 381089 | || ||| || || || | ||||| ||||| |||||||||||| || || || | Sbjct 1780585 -GCAGGTGATCTAGGACCAGTATACGGCTTTCAATGGAGACATTTTGGAGCAGAATACAA 1780527 Query 381090 TAATTGTGATAGTGATTATACTGGTAAGGGTGTCGACCAGTTAAAATATATCATAGACCA 381149 | || ||| ||||||||| || | ||||| || || |||| | | | || || | Sbjct 1780526 AACGTGCGATGATGATTATACAGGACAAGGTGTTGATCAATTAAGAGAAGTGATTGATAA 1780467 Query 381150 GCTAAAAAATCCTGAAACAAGAAATTCACGCCGACTAATTATGACTGCGTGGAATCCTTG 381209 | |||||| | ||| ||| || || ||||| ||| ||| |||||||| | Sbjct 1780466 AATTAAAAATAATCCAAC-AGA-----TCGAAGAATAATTTTGAGTGCATGGAATCC--G 1780415 Query 381210 CCAGATT--AATGATATGGCTTTACCACCTTGCCATATTTTATGCCAGTT 381257 |||||| | | ||||| ||||||||||| ||||| || || || || Sbjct 1780414 GCAGATTTAACAAAGATGGCATTACCACCTTGTCATATGTTTTGTCAATT 1780365 Score = 84.2 bits (92), Expect = 6e-11 Identities = 253/385 (66%), Gaps = 12/385 (3%) Strand=Plus/Minus Query 59988 AACCAGTACCAATACCCTTTGTTCCATTGATAAGAATCATCGGGATAATTGGGATATAAT 60047 |||| ||||| ||||| | ||||||||| | | || || | | || || || Sbjct 1334288 AACCGGTACCGATACCTTCACTTCCATTGAGCAACAGCAATGGAACACAAGGAATGTACC 1334229 Query 60048 AAACTGGCTCAACACTATCACCATCATCTTTTAAGTATGTTAAAACCTTGTCGTCAATTT 60107 | | ||||||| ||| | |||||| || || | ||| | |||| | ||| ||| Sbjct 1334228 ACTCAGGCTCAATACTTTGACCATCTTCGTTAAGGTAATTCAAAAGCCCGTCATCAG--- 1334172 Query 60108 CGGGA---AATATAGCCCGAGTAATCT-TGGATAATTGTGTGAAAATATACCTCTCGGAT 60163 | ||| || | || || || || | || | ||| |||||||| || | |||| Sbjct 1334171 CAGGATGGAAGAGAGTACGTGTGATATCTGCAACATTC-GTGAAAATGTAACGAGCGGAA 1334113 Query 60164 GCTGCGTCCTTGCCACCCATAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAATAGATTA 60223 || || || || || ||||| | ||| || || ||||| |||||||| | | ||| Sbjct 1334112 GCAGCATCTTTACCTCCCATCATACGCGTACCGAATTGACCGTTTGGTAAAAGGATATTG 1334053 Query 60224 ATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAGCACCATTT--AAACTGG 60281 | ||||| | || || || | ||| || | | ||||||| ||||| ||||| | Sbjct 1334052 ACATTGTTTGCTCCAACAAAGTCTTGGGCCAAATTGACAATAGT--CATTTGCAAACTTG 1333995 Query 60282 CTTCACCGTGATGATATCCAGAATGTTCTGAAACATATCCACTGAATTGTGCGACTTTAA 60341 |||||||||||| || | | ||| ||| | ||||| || || | ||||| | Sbjct 1333994 TTTCACCGTGATGGTAAGCTGCATGCTCTAATACATAGCCGGACAAGGAACCTACTTTGA 1333935 Query 60342 TTTCGGAGTGGAGTTTTTTCTTGAA 60366 ||||| | ||||||| ||||||| Sbjct 1333934 TTTCGCCCTTGAGTTTTCTCTTGAA 1333910 >seq3 Length=3165745 Score = 98.7 bits (108), Expect = 3e-15 Identities = 124/164 (76%), Gaps = 6/164 (4%) Strand=Plus/Minus Query 251410 AGACCACACTTATTACACACATGGACGCTG-TAAGCATCAGATGCGTCATATAGCCGACC 251468 ||||| || |||| ||| || || | | || || |||||||| || ||||| | || | Sbjct 2164208 AGACCGCAATTATCACAAACGTGAA-GTTGATAGGCATCAGAGGCATCATACATACGTTC 2164150 Query 251469 CTTGGTGAA-GC-GAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 ||| ||| || | || |||||| || ||||||||||||||||||||||| |||||| Sbjct 2164149 CTTCAAGAATGCTGCAAT--ACCGTGAGAGATCATACAATCACGCTCCATTTCTCCGAAA 2164092 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGT 251570 || ||||||||| | |||| | ||| ||| |||| || || || Sbjct 2164091 CGGAGACCACCACCACGAGAACGACCTTCGACAGGTTGTCGGGT 2164048 >seq1 Length=6968282 Score = 87.8 bits (96), Expect = 5e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 251497 ATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTACCCTCG 251556 |||| ||||||||||||||| || || || || | ||||||||| || | |||||| ||| Sbjct 313737 ATCAAACAATCACGCTCCATCTCTCCCAATCGTAAACCACCATCTCGCGACCTACCTTCG 313796 Query 251557 GCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGCTTATCATTT 251616 | ||| || | |||||| || | ||||||| |||| ||| ||| ||| || | Sbjct 313797 GTAGGTTGTCTCGTGAGAATAGCTCTAGGACCTCTGGAACGGGCATGCATCTTGTCTATC 313856 Query 251617 ACCATATGCTTGAGACGCTGGTA 251639 ||||| || || | ||| || || Sbjct 313857 ACCATGTGTTTCAAACGTTGATA 313879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816506255546