Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1 149 6e-31 seq2 141 8e-29 seq3 113 4e-20 >seq1 Length=6968282 Score = 149 bits (164), Expect = 6e-31 Identities = 164/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || || ||||| || || || || || || ||||| ||| || | Sbjct 6897801 ATGCAAATTTTTGTCAAGACACTAACAGGAAAGACAATCACACTAGAAGTCGAAAGCAGC 6897860 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||||||||||||||| || || || || ||| Sbjct 6897861 GACACTATTGAYAACGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 6897920 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAA 24882 ||||||||||||||||| || ||||| |||| || || ||| || | ||||| || Sbjct 6897921 CAACGTTTGATCTTTGCAGGTAAACAATTGGAAGA-CGGACGCACATTGGCTGATTACAA 6897979 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 |||||| || ||||| ||||| |||||||| ||||| Sbjct 6897980 CATTCAGAAAGAATCTACACTCCACTTGGTCTTGCG 6898015 Score = 136 bits (150), Expect = 4e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||| || ||| | ||||| || || |||||||| || || ||||| || ||| | Sbjct 5661211 ACCATGCAAATTTTTGTAAAAACCCTTACGGGTAAAACAATCACCCTCGAGGTTGAATCA 5661152 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||| || | || | || || |||||| |||||||| ||||| || || || || Sbjct 5661151 AACGATACTATTGACAATGTTAAGGCAAAGATTCAAGACAAGGAAGGTATTCCACCAGAC 5661092 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 ||||||||||| |||||||| || || || |||| ||| | | | || | ||||| Sbjct 5661091 CAACAACGTTTAATCTTTGCTGGTAAGCAATTGGAAGATGGGCGTACTTTGGCTGATTAC 5661032 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| ||||||||||| || | |||||||| ||||| Sbjct 5661031 AACATCCAAAAGGAATCCACCTTGCACTTGGTCTTGCG 5660994 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | ||||| | || || || || || || | ||||| ||| | || Sbjct 6898257 ATGCAAATCTTTGTCAAAACATTGACAGGAAAGACGATCACATTGGAAGTTGAATCTTCC 6898316 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| ||||| |||||||||||||| || || || || ||| Sbjct 6898317 GACACGATTGACAATGTCAAAGCCAAGATTCAAGACAAAGAAGGTATCCCGCCAGACCAA 6898376 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||||||||| || ||||| |||| || | | || | ||||| ||| Sbjct 6898377 CAACGTTTGATCTTTGCAGGTAAACAATTGGAAGACGGCCGTACTTTGGCTGATTACAAC 6898436 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || ||||||||||| || | |||||||||||||| Sbjct 6898437 ATCCAAAAGGAATCTACCTTGCACTTGGTGTTGCG 6898471 Score = 132 bits (146), Expect = 4e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| |||||| | || || | || ||||| || ||||| || || || ||| || | Sbjct 6897572 GATGCAAATCTTTGTCAAGACCTTGACTGGTAAGACAATTACCCTTGAGGTTGAATCCTC 6897631 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || | || ||| |||||||||||||||||||| || || || || || Sbjct 6897632 TGATACTATTGACAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCA 6897691 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | |||||||||||||| || || |||| || | | || | || || || Sbjct 6897692 ACAAAGATTGATCTTTGCCGGTAAGCAATTGGAAGACGGTCGCACTTTGGCTGACTACAA 6897751 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| |||||||| || ||||| |||||||||||||| Sbjct 6897752 CATCCAAAAGGAGTCCACACTTCACTTGGTGTTGCG 6897787 Score = 122 bits (134), Expect = 8e-23 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 || ||||| || || || || || || || | |||||||| | || | || || Sbjct 595350 ACAGGTAAGACCATCACCCTTGAGGTGGAGTCATCCGACACAATCGACAACGTCAAGGCT 595409 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||||||||| |||||||| || || || |||||||||||||||||||| || || Sbjct 595410 AAGATCCAAGACAAGGAAGGAATTCCACCAGACCAACAACGTTTGATCTTTGCTGGAAAG 595469 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || |||| ||| |||| || | ||||| ||||| ||||||||||| || | ||| Sbjct 595470 CAATTGGAAGATGGCAGAACTTTGGCTGATTACAACATCCAAAAGGAATCTACTTTGCAC 595529 Query 24908 TTGGT 24912 ||||| Sbjct 595530 TTGGT 595534 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || || || ||||| || || || || ||||| ||| || Sbjct 6898029 ATGCAAATCTTTGTCAAGACACTTACTGGTAAGACAATCACACTAGAAGTCGAAAGCAGT 6898088 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | || ||| |||||||||||||||||||| || || || || ||| Sbjct 6898089 GATACAATTGATAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGACCAA 6898148 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAA 24882 |||||| | || || || || || || |||| || || ||| || | || || || Sbjct 6898149 CAACGTCTCATTTTCGCTGGTAAGCAATTGGAAGA-CGGACGCACATTGGCTGACTACAA 6898207 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| ||||| || || || |||| ||||| ||||| Sbjct 6898208 CATCCAAAAAGAGTCCACCTTACATTTGGTATTGCG 6898243 >seq2 Length=3834998 Score = 141 bits (156), Expect = 8e-29 Identities = 478/733 (65%), Gaps = 25/733 (3%) Strand=Plus/Plus Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567 || || ||||| || || || || || | ||| ||||| ||||||||| ||||| Sbjct 3099603 ACTTGGAATTCTCCTGCTAACACACGCCTTGTGTAGATGTTTGAGGTGAAAGGTTCAAAG 3099662 Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627 |||| ||| ||| | ||| ||| || | || || |||||| |||| ||| || Sbjct 3099663 CATTCATTGAATCCTAAAATTTGACTGGTAGAAGCAGTAGGCATGGGTGCCAACAATAGC 3099722 Query 138628 GAATTCCGTAAACCGTGAAGCTTGATTC-GTTCCTTGAGCGACGACCAGTCCCACAAATC 138686 ||||| ||||||||||| || | || ||| || || ||||||| ||| | ||| Sbjct 3099723 GAATTACGTAAACCGTG-CTCTGCAATCTTTTCTTTTAGTTCAGACCAGTTCCATAGATC 3099781 Query 138687 GCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTC 138746 | ||| || ||||||||| || || ||||| |||| |||||| || || || Sbjct 3099782 GGATGGTGTTACGTTCCACATGTCATATTGTAATTCTCCCTTACTTGCAGGGGATCCCTC 3099841 Query 138747 GTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATA 138806 ||| | || ||| || || |||| ||||| ||| || ||| | ||| ||| Sbjct 3099842 GTATGTTTCATATGTTCCTAATTCTTTAGCCAATTCGCAACTTCTCTCCAAAGCAGCATG 3099901 Query 138807 GTAAATAGTTTCGGCAATCTGCTGATTGAGCAAT---CGGGCCTCGGCGCTCTCGTACGG 138863 ||| || |||| ||| ||| | |||| || || |||| ||| | || Sbjct 3099902 GTAGATCGTTT---CAAAGATTTGAACGTTCAATTTGCGTGCTTCGGGTGAATCGAAGGG 3099958 Query 138864 CATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATG 138923 ||| | | ||| |||| || || || || || | || || | |||| ||| || || Sbjct 3099959 CATACCCAAGATCATGAATGCATCTGCAAGACCGTTGACTCCGATACCGATAGGACGGTG 3100018 Query 138924 GCGCAGATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTTTACATCGATGATTTTGTT 138983 |||| || || ||| |||||| || ||||| || | ||| || |||||||| Sbjct 3100019 ACGCATGTTAGATCTGCGTGCTTCTTCGACTGGGTAATAATTGATATCAATAATTTTGTT 3100078 Query 138984 TAAATTTCGCAC-GACCACCTTAGTCGTATGC-TTTAATCGTTCAAAATCGTATGTGCCC 139041 || || | ||| || || ||| | | ||| | ||| | ||||| || || Sbjct 3100079 CAAGTTAC-CACAGATCA-CTTTGGCAACTGCGTGTAACTTCTTGAAATCATAAGT---- 3100132 Query 139042 CCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACA--AATCGAGGCTATGTTGCACA 139099 | |||| | | ||| || | |||| || | |||||| || | ||||||| Sbjct 3100133 -CTTTGTTG----CAGGGTCAAC--GTAGGTTGGCAAAGCAATCGAAGCCAAATTGCACA 3100185 Query 139100 CCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGA 139159 | || ||||| || || | | |||||| | |||||| | ||||| ||| ||||| Sbjct 3100186 CGGCAACTTCATCAGGTGCACAGTATTCAATAATTTCTGTGCACAAGTTAGAGTTCTTGA 3100245 Query 139160 TCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACG 139219 | ||||| ||||| | ||| || ||||||| ||| ||||||||||| | ||| | | Sbjct 3100246 TGGTACCCAAATTCTTTTGGTTACTTTTTCTGTTTGCTGCATCTTTGTACAACATGAATG 3100305 Query 139220 GTGTGCCAGTTTC 139232 | | |||||||| Sbjct 3100306 GGTTACCAGTTTC 3100318 >seq3 Length=3165745 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || | || || ||||||||||| | || || ||| | | Sbjct 2529460 ATGCAAATCTTTGTCAAGACATTGACGGGAAAAACTATTACCTTGGAGGTGGAATCATCT 2529519 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | || ||| ||||| || || |||||||| || || || || ||| Sbjct 2529520 GATACAATCGATAACGTCAAAGCCAAGATTCAGGATAAAGAAGGTATTCCACCAGACCAA 2529579 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAA 24882 ||||||||||||||||| || ||||| | || || || ||| || | ||||| || Sbjct 2529580 CAACGTTTGATCTTTGCTGGTAAACAATTAGAAGA-CGGACGTACATTGGCCGATTACAA 2529638 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933 ||||||||| ||| || || || | || ||||| ||||| || || || Sbjct 2529639 CATTCAAAAAGAAAGCACTCTTCATCTCGTTTTGCGCTTGCGTGGCGGAGG 2529689 Score = 102 bits (112), Expect = 7e-17 Identities = 164/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||| |||||| | ||||| | ||||| || || || || | || || ||| | Sbjct 2529229 ACTATGCAAATCTTTGTAAAAACTTTGACCGGAAAGACGATCACTTTGGAGGTTGAATCT 2529288 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || || | || | || || ||||| |||||||||||||| || || || ||| Sbjct 2529289 TCGGATACCATTGACAACGTCAAGGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGAT 2529348 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACA-TGTCAGAT 24877 ||||||||| | |||||||| || || || |||| ||| ||| ||| || | ||| Sbjct 2529349 CAACAACGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCG---TACATTGGCCGAT 2529405 Query 24878 TATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || ||||||||| ||||| || | || ||| |||| || || || Sbjct 2529406 TACAATATCCAAAAGGAAAGCACACTCCATCTCGTTTTGAGATTACGTGGTGG 2529458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897273824240