Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq1 107 3e-18 seq3 98.7 2e-15 >seq1 Length=6968282 Score = 107 bits (118), Expect = 3e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || ||| |||||||||| ||||| || | || || ||| | || Sbjct 6897802 TGCAAATTTTTGTCAAGACACTAACAGGAAAGACAATCACACTAGAAGTCGAAAGCAGCG 6897861 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| | || || ||| || || ||| |||||||| || ||||| || |||| Sbjct 6897862 ACACTATTGAYAACGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAAC 6897921 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || ||||||||||||||||| || || | || || | ||||| || | Sbjct 6897922 AACGTTTGATCTTTGCAGGTAAACAATTGGAAGACGGACGCACATTGGCTGATTACAACA 6897981 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | || |||||||| || |||| || || || || Sbjct 6897982 TTCAGAAAGAATCTACACTCCACTTGGTCTTGCG 6898015 Score = 102 bits (112), Expect = 1e-16 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || ||||||| | || || |||||||| || | || || ||| |||| Sbjct 5661207 TGCAAATTTTTGTAAAAACCCTTACGGGTAAAACAATCACCCTCGAGGTTGAATCAAACG 5661148 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | ||||| || || || ||| || ||||| |||||||| || |||| Sbjct 5661147 ATACTATTGACAATGTTAAGGCAAAGATTCAAGACAAGGAAGGTATTCCACCAGACCAAC 5661088 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || ||||| ||||| ||||| || ||| | || || | ||||| || | Sbjct 5661087 AACGTTTAATCTTTGCTGGTAAGCAATTGGAAGATGGGCGTACTTTGGCTGATTACAACA 5661028 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||| ||||| || | || || || || || Sbjct 5661027 TCCAAAAGGAATCCACCTTGCACTTGGTCTTGCG 5660994 Score = 98.7 bits (108), Expect = 2e-15 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | |||||||| |||||||| || || || | || || ||| | || Sbjct 6898258 TGCAAATCTTTGTCAAAACATTGACAGGAAAGACGATCACATTGGAAGTTGAATCTTCCG 6898317 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| ||| || || ||| |||||||| || || || || |||| Sbjct 6898318 ACACGATTGACAATGTCAAAGCCAAGATTCAAGACAAAGAAGGTATCCCGCCAGACCAAC 6898377 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || ||||||||||||||||| || || | || || | ||||| || | Sbjct 6898378 AACGTTTGATCTTTGCAGGTAAACAATTGGAAGACGGCCGTACTTTGGCTGATTACAACA 6898437 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||| ||||| || | || || || || || Sbjct 6898438 TCCAAAAGGAATCTACCTTGCACTTGGTGTTGCG 6898471 >seq3 Length=3165745 Score = 98.7 bits (108), Expect = 2e-15 Identities = 154/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| || | || ||||| || |||||||| ||||| | || || ||| ||| Sbjct 2529461 TGCAAATCTTTGTCAAGACATTGACGGGAAAAACTATTACCTTGGAGGTGGAATCATCT- 2529519 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| || | || || ||| || || || ||||||||| |||||||| || ||| Sbjct 2529520 GATACAATCGATAACGTCAAAGCCAAGATTCAGGATAAAGAAGGTATTCCACCAGACCAA 2529579 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| | | || ||||| |||||||||||||| || | || || | ||||| || Sbjct 2529580 CAACGTTTGATCTTTGCTGGTAAACAATTAGAAGACGGACGTACATTGGCCGATTACAAC 2529639 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATT 146248 || ||||||||| ||| | ||| | || || || || Sbjct 2529640 ATTCAAAAAGAAAGCACTCTTCATCTCGTTTTGCGCTT 2529677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786165830029360