Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1 141 7e-29 seq3 118 8e-22 >seq1 Length=6968282 Score = 141 bits (156), Expect = 7e-29 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| |||||| ||||| ||||| || ||||| ||||| || || || | |||||| Sbjct 6897788 ACGCAACACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGCCAAAGTGCGACC 6897729 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || | ||| || || ||| | ||||||||||| || || || || ||||| ||||| Sbjct 6897728 GTCTTCCAATTGCTTACCGGCAAAGATCAATCTTTGTTGGTCTGGTGGGATACCTTCTTT 6897669 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || ||||||| | || | ||| ||||| ||| || ||||| || || Sbjct 6897668 GTCTTGGATCTTGGCTTTGACATTGTCAATAGTATCAGAGGATTCAACCTCAAGGGTAAT 6897609 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| ||||| || ||||| || ||||| Sbjct 6897608 TGTCTTACCAGTCAAGGTCTTGACAAAGATTTGCAT 6897573 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| |||||| || | || ||||| ||||| ||||| ||||| || | || || Sbjct 6898472 ACGCAACACCAAGTGCAAGGTAGATTCCTTTTGGATGTTGTAATCAGCCAAAGTACGGCC 6898413 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || | |||||| || ||| | ||||| | ||| || || ||||| ||||| ||||| Sbjct 6898412 GTCTTCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCTGGCGGGATACCTTCTTT 6898353 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| ||| || | ||||||| | || | ||||| ||| ||| ||||| | || | Sbjct 6898352 GTCTTG-AATCTTGGCTTTGACATTGTCAATCGTGTCGGAAGATTCAACTTCCAATGTGA 6898294 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || || || || ||||| ||||| || ||||| Sbjct 6898293 TCGTCTTTCCTGTCAATGTTTTGACAAAGATTTGCAT 6898257 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||| ||||| || || || |||||||| |||||||| ||||| || | ||||| Sbjct 6898015 CGCAAGACCAAGTGGAGTGTAGATTCTTTCTGAATGTTGTAATCAGCCAATGTGCGTCCG 6897956 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | |||||| || ||| | ||||| | ||| || || || || ||||| |||||| Sbjct 6897955 TCTTCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTG 6897896 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || |||||| | || | |||||| ||| ||||| || || || Sbjct 6897895 TCTTGGATCTTGGCTTTGACGTTRTCAATAGTGTCGCTGCTTTCGACTTCTAGTGTGATT 6897836 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || |||| || || ||||| || ||||| Sbjct 6897835 GTCTTTCCTGTTAGTGTCTTGACAAAAATTTGCAT 6897801 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| |||||||| | ||||| |||||||| ||||| || || || | ||||| Sbjct 6898244 ACGCAATACCAAATGTAAGGTGGACTCTTTTTGGATGTTGTAGTCAGCCAATGTGCGTCC 6898185 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || | ||| || ||||| | || | | ||| || || || |||||||| ||||| Sbjct 6898184 GTCTTCCAATTGCTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGAATACCTTCTTT 6898125 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || ||||||| | || | || ||| ||| ||||| || || || Sbjct 6898124 GTCTTGGATCTTGGCTTTGACATTATCAATTGTATCACTGCTTTCGACTTCTAGTGTGAT 6898065 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| | || || ||||| || ||||| Sbjct 6898064 TGTCTTACCAGTAAGTGTCTTGACAAAGATTTGCAT 6898029 >seq3 Length=3165745 Score = 118 bits (130), Expect = 8e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || | ||| |||| || | |||||| ||| ||||||||||||||| ||||| || Sbjct 2529687 TCCGCCACGCAAGCGCAAAACGAGATGAAGAGTGCTTTCTTTTTGAATGTTGTAATCGGC 2529628 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || || || || | |||||| |||||| | ||||| | ||| || || || || Sbjct 2529627 CAATGTACGTCCGTCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGTGG 2529568 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 |||||| ||||| || || ||| || | |||||| | || | || ||||| ||| | Sbjct 2529567 AATACCTTCTTTATCCTG-AATCTTGGCTTTGACGTTATCGATTGTATCAGATGATTCCA 2529509 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || | || |||||||| || || || || || ||||| || ||||| Sbjct 2529508 CCTCCAAGGTAATAGTTTTTCCCGTCAATGTCTTGACAAAGATTTGCAT 2529460 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 ||| || ||| ||| ||||| || || ||||| || | || ||| ||| || | ||| Sbjct 2529435 ATGGAGTGTGCTTTCCTTTTGGATATTGTAATCGGCCAATGTACGACCATCTTCCAATTG 2529376 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 || |||||| | || | | ||| ||||| || |||||||| ||||||||||| ||| | Sbjct 2529375 CTTACCAGCAAAGATAAGACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTG-AATCT 2529317 Query 29703 TTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAG 29761 | | ||||| | || | || || ||| ||| || || | ||| || || || || | Sbjct 2529316 TGGCCTTGACGTTGTCAATGGTATCCGAAGATTCAACCTCCAAAGTGATCGTCTTTCCGG 2529257 Query 29762 TTAAGGTTTTAACAAATATCTGCAT 29786 | || ||||| ||||| || ||||| Sbjct 2529256 TCAAAGTTTTTACAAAGATTTGCAT 2529232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385218927698178