Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1 363 1e-94 seq2 118 8e-21 seq4 104 2e-16 >seq1 Length=6968282 Score = 363 bits (402), Expect = 1e-94 Identities = 778/1150 (68%), Gaps = 22/1150 (2%) Strand=Plus/Minus Query 281756 AGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCA 281815 ||||| || ||||||| ||| ||||| || |||||||| |||||||| || | || | Sbjct 1555683 AGAATGGCAGCTTGAACAGCGGCACCGTAAGCAACAGCCTCATCAGGGTTGATAGACTTT 1555624 Query 281816 TTTAGTTTTTTACCATTGAAAAAATTT-GAAAGAAGTTGTCTTACCTTAGGAATACGAGA 281874 ||| | | || ||||| || | | || || || | || |||||||||| Sbjct 1555623 TTTGGCTCACGGCCGTTGAAGAAGTCGCGCAACAACTTTTGG-ACACGGGGAATACGAGT 1555565 Query 281875 TGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAA 281934 || || ||||| || || ||||| || || | ||| || | || ||||| || Sbjct 1555564 GGAACCACCAACCAAGACGATTTCGTGAACGGATCCTTTGTCAATCTTGGAATCACGCAA 1555505 Query 281935 AACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTT 281994 || || || || || || | | |||||||| || | ||||||||| Sbjct 1555504 GACCTTCTCGACTGGCTCGATAGTGTGGGAGAACAAGTCACCGCACAATTCTTCGAAACG 1555445 Query 281995 AGCTCTAGTAAGAGTGACATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCG 282053 ||| | || | || | || || ||||| || |||||||| ||||| | ||| |||| Sbjct 1555444 AGCACGGGTGATAGA-AGTGTAGAAGTCAATACCCTCGAACAATGAATCGATTTCGATCG 1555386 Query 282054 TAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTC 282113 |||||||| | ||| || |||| ||| |||||||||||||||||||| | | | | Sbjct 1555385 AAGTTTGAGCGGCAGATGAAAGTGTACGCTTAGCACGTTCACATGCTGTACGCAAACGAC 1555326 Query 282114 GTAAGGCTTTTGCTGATTGAT-TCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACA 282172 | | || || | | ||| |||| || | || |||| | |||||| |||| ||| Sbjct 1555325 GGAGAGCACGAGC-GTTGGATGTCAAGTCCTTCTTTGATTTACGCTTGAATTCTTGAACG 1555267 Query 282173 CACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTA 282232 | | ||||||||||| ||||| |||||||| ||||| | ||| | || | ||| Sbjct 1555266 AAGTGGTTGACAAGACGATTGTCAAAGTCTTCACCACCCAAGTGAGTGTCACCAGCAGTA 1555207 Query 282233 GCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCA 282292 || | |||| ||||| || ||||| | | |||||| | ||||| || ||||| Sbjct 1555206 GCCTTGACTTCGAAAATACCTTCTTCGATTGTCAAAAGGGAGACATCGAAAGTACCACCT 1555147 Query 282293 CCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGG---TTTTTATCAAGACCATAC 282349 |||| ||| ||||| || || ||| ||||| ||| | || || || | ||| || Sbjct 1555146 CCCAAATCGAAAATGAGAACGTTCTTTTCTCCAGCTTCGCCCTTCTTGTCCAAACCGTAT 1555087 Query 282350 GCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTT 282409 |||| ||||||||| ||||| || || || || | || ||| || | ||||| || Sbjct 1555086 GCAATAGCAGCAGCGGTTGGCTCGTTGATGATACGCATAACGTTCAAACCAGAGATAACA 1555027 Query 282410 CCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACG 282469 || |||||||| || ||||| | ||| || ||||| || ||||| |||||||| | |||| Sbjct 1555026 CCGGCATCTTTGGTTGCTTGACGTTGAGAGTCGTTGAAGTATGCGGGAACAGTGACAACG 1554967 Query 282470 GCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATC 282529 ||||| | || | || | ||||| || |||| ||| || |||| | Sbjct 1554966 GCATCCTTGACGCTTCCACCTAAGTAAGCTTCAGCAGTTTCGCGCATCTTTAGCAAAACC 1554907 Query 282530 ATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAA 282589 || || || |||| ||| || | | ||| |||| | ||| |||| || Sbjct 1554906 ATAGAAGAGATTTCTTCGGGTGTGAAGGTCTTTTGTTCACCCTTGTATTCGACTTGAATG 1554847 Query 282590 TATGGTTTATTACCAACATT---AATAACTTTAAATGGCCAATATTTCATATCTGATTGA 282646 ||| || ||| | || ||| || | |||||||||| |||||||||||||||| Sbjct 1554846 ATTGG---CTTGCCATCTTTTGAAATGACGGTGAATGGCCAATGTTTCATATCTGATTGA 1554790 Query 282647 ACACTTTGG--TCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGG 282704 |||| | |||| || | | || || || |||||||| || |||| || ||| Sbjct 1554789 --ACTTCAGCATCATCGAATTTGCGTCCGATCAAACGTTTTGCGTCGAAAACTGTGTTGT 1554732 Query 282705 TTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAA 282764 || || | ||| |||| | || || ||||| || |||| | |||| || ||||| | Sbjct 1554731 GAGGGTTCATTGCGACTTGGTTCTTTGCGGCATCACCGATCAAACGTTCAGTGTCTGTGA 1554672 Query 282765 ATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTAC 282824 ||| |||||||||||| |||||||| ||||||||||| || ||||| | |||||| Sbjct 1554671 ATGCAACATATGATGGTGTTGTGCGGTTACCTTGATCGTTGGCAATGACTTCAACACGGT 1554612 Query 282825 CATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCAATTT 282884 |||||||||| || | ||||| | ||||| || ||||||||||| | ||| || Sbjct 1554611 CATTTTGCCAAACGGCAACACATGAGTAGGTTGTACCCAAATCAATACCGACAGC---TT 1554555 Query 282885 TATCTGACAT 282894 | ||||||| Sbjct 1554554 TTGCTGACAT 1554545 Score = 154 bits (170), Expect = 1e-31 Identities = 459/702 (65%), Gaps = 22/702 (3%) Strand=Plus/Plus Query 282187 ACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAA 282246 ||| ||||| ||||||||||| ||||| | ||||| || | ||||| |||| || Sbjct 6931626 ACGGTTATCGAAATCTTCACCACCCAAATGAGTATCACCAGCAGTAGCCAAGACTTCAAA 6931685 Query 282247 AAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAAT 282306 | |||||||| | ||| ||||||| |||||| || |||||||||| |||| | | Sbjct 6931686 TACACCATCTTCGATAGATAAAAGAGAAACATCGAAAGTACCACCACCCAAATCATACAC 6931745 Query 282307 AAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 282366 || | |||| ||| || || || | ||| || |||| || ||||| || Sbjct 6931746 AA------TGATTTGAGAGTCACCCTTCTTGTCCAAACCGTATGCAATTGCTGCAGCTGT 6931799 Query 282367 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426 ||||| || | || | |||||| | | ||| |||||| | |||||||| || ||||| Sbjct 6931800 GGGTTCGTTGACGATACGCAAAACGGTCAAACCGGCAATTGTACCTGCATCCTTTGTGGC 6931859 Query 282427 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTT 282486 ||| | ||| | || || || ||||| ||||| |||| |||||| | || || | | Sbjct 6931860 TTGACGTTGGGCGTCATTGAAGTATGCTGGAACGGTAACAACGGCGTGAGTGACCTTGTG 6931919 Query 282487 TCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTC 282546 || | |||||| |||||||| |||||| || || | ||| | || |||| ||| Sbjct 6931920 GCCTAAATAAGCTTCTGCTGTTTCTTTCATCTTTTGCAAGACCATGGCAGAGATTTCTTC 6931979 Query 282547 TGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATA--TGG-----TTTAT 282599 |||| || | || | | || | | ||||||| | | | | ||| Sbjct 6931980 AGGAGTGAAT-GTACGGGTAC-TTCCGCGA----ACTTCAACAGAGATAGCAGCTTTTCC 6932033 Query 282600 TACCAACATT-AATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCA 282658 || | || || | ||| || || | | |||| | ||| | || Sbjct 6932034 GTCC--CGTTCAACCAATTTGAAGGGGAAGTGACGAGCATCTTTCTTGACATCAGGATCG 6932091 Query 282659 TTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCA 282718 || | | | ||||||||| || || |||||||| || ||| |||||| |||| Sbjct 6932092 TTCCATGCACGACCAATTAAACGCTTGGCATCAAAGATTGTACGTTCTGGATTTTGTGCA 6932151 Query 282719 GCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGAT 282778 ||||||| || || || || ||||| | | |||| || || | || | || Sbjct 6932152 GCTTGATTCTTTGCAGCGTCACCAATTAAACGTTCATCATCACCGAAAGCGACCCAAGAA 6932211 Query 282779 GGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACA 282838 ||||| | |||||||||||||| || ||||||||||| || ||| || | ||| Sbjct 6932212 GGAGTGATACGATTACCTTGATCGTTTGCAATAATTTCTACACGACCTTTACGTTGAACA 6932271 Query 282839 CCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 282880 || ||||| | | ||||| || ||||||||||| ||| || Sbjct 6932272 CCGACACATGAATATGTTGTACCCAAATCAATACCGATAACA 6932313 Score = 134 bits (148), Expect = 1e-25 Identities = 391/596 (66%), Gaps = 12/596 (2%) Strand=Plus/Plus Query 281308 ATCTGCTTCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAA 281367 |||| ||| ||||||||| ||||||| | | ||| | | |||||| ||||||| || Sbjct 6930753 ATCTTGTTCGGCAAATTCTTCAGCTTCTTTGACCATCTTTTGAATTTGTTCTTCAGTCAA 6930812 Query 281368 TCTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGC 281427 | || || || || || |||| | | | |||||| |||| ||||||||| || Sbjct 6930813 ACGACCTTTATCGTTGGTGATGGTAACACTTTCGGATTTTCCTGTTCCTTTATCAGCAGC 6930872 Query 281428 AGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCC 281487 | || || | || || || || ||||| || || |||||||| ||||| || || || Sbjct 6930873 GGAAACTTTCATGATTCCGTTTGCGTCCAATTCGAAAGTGACTTCGATTTGTGGTACACC 6930932 Query 281488 TCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGT 281547 || ||||||||||||| || || | ||| | |||| | | || | || Sbjct 6930933 TCGAGGAGCAGGTGGGATACCAGTTAATTCGAATTTACCCAACATGTGGTTCTGAGACGT 6930992 Query 281548 GAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGT 281607 || |||||||| ||||| | ||| || || || |||| ||||| | | ||| Sbjct 6930993 CAAAGCACGTTCACCTTCGAACACTTGAATCAAGACAACGTTTTGGTTATCGGCAGCAGT 6931052 Query 281608 TGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCAT 281667 | || | | || || || |||||| ||||| | || | || ||||| Sbjct 6931053 ACTGAAAATTTGAGACTTCTTGGTAGGAATGACGGTGTTACGTGGGATCAACTTTGTCAT 6931112 Query 281668 AATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA-T 281726 | ||||| | |||||| | |||||| | |||||| | ||||||| | |||| | Sbjct 6931113 CACTCCACCTGTTGTTTCAATACCAAGTGTAAGAGGGTTAACATCAATCA--ACAAGACA 6931170 Query 281727 TTTGAAG-TTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATAT 281785 | || | |||||| ||| | | || | | |||||| |||||||| | Sbjct 6931171 TCTGCTGCACCTTCATC------ACCGGCCAAAACACCACCTTGAACCGCAGCACCCCAA 6931224 Query 281786 GCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGA 281844 ||||||||||||||||| |||| | || | || | | |||||| | || || | || Sbjct 6931225 GCAACAGCTTCATCAGGGTTAATACCTTTACTTGGCTCTTTACCGTCAAAGAATTCTTTC 6931284 Query 281845 AAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCAT 281900 || || |||| ||||| |||||||| | || || || || || |||| |||| Sbjct 6931285 AACAA-TTGTTGAACCTTTGGAATACGCGTGGAACCACCGACCAAAACAACATCAT 6931339 >seq2 Length=3834998 Score = 118 bits (130), Expect = 8e-21 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 282334 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 282393 ||| |||||||| || |||| |||||| ||||||||||| ||||||| | | ||| | Sbjct 3373944 TTTGTCAAGACCGTAAGCAAGAGCAGCGGCAGTTGGTTCGTTAATAACACGGAGAACGTC 3374003 Query 282394 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453 | ||| |||||| | |||||||| || || ||||| | ||| || |||||||| || || Sbjct 3374004 CAAACCGGCAATTGTACCTGCATCCTTTGTTGCTTGACGTTGAGAGTCGTTAAAGTAAGC 3374063 Query 282454 AGGAACAGTAATAACGGC 282471 ||| |||||||| ||||| Sbjct 3374064 AGGGACAGTAATGACGGC 3374081 >seq4 Length=1961900 Score = 104 bits (114), Expect = 2e-16 Identities = 330/503 (66%), Gaps = 24/503 (5%) Strand=Plus/Plus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356 |||||||| || ||||| || ||||| ||||| ||| |||| || | | ||||||| Sbjct 1333115 TGTACCCTGATCTTGACCGAAGGAGACTCAGCCAAAGCATTAGCAGTTGCGGGCCTTACA 1333174 Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416 | | || | || ||| ||||||||||||||| | || ||| | | || ||| | Sbjct 1333175 GAAGTAGGCCGGGACAATTTCGGAGTTTTCCCACTTCGTGGTAAATTGCTAAACGTTCGT 1333234 Query 400417 GATGCTAGTCCTaaaaaaaTTGCCGATAATGAGGAAATTACAGCAATCaaaaaaaTTGTT 400476 || || |||| | |||| | |||| ||||| ||| || || | || | Sbjct 1333235 GAGGCAAGTCACGACCAAATCATGAAGAATGCTGAAATCACAAATATTAAGACCATCATG 1333294 Query 400477 GGACTTGAACAAGGAAAAGTTTATGATGATCTCAAAGGTTTACGATATGGTAGTATTATG 400536 || ||| |||| |||| ||| ||||| | | | || | || |||||| || | ||| Sbjct 1333295 GGTCTTAAACATGGAACAGTGTATGAGTCTACCGATAGTCTTCGTTATGGTCGTTTGATG 1333354 Query 400537 ATTCTTGCTGATCAAGATGTTGATGGGTACCATATCAAAGGATTAATCATGAATTTTATC 400596 || | | ||||||||| ||||| | || || ||||| | ||||| || || | Sbjct 1333355 ATCATGACCGATCAAGATCACGATGGATCACACATTAAAGGTCTGATCATCAACTTCCTT 1333414 Query 400597 CATTGTTTTTGGCCATCTCTTGTTAAATACGA----AGGGTTTATTC--AATCATTTGCA 400650 || |||| || || ||||||||| || | | ||| || | ||||| Sbjct 1333415 GATCACTTTTTCCCTTC-CTTGTTAAA-ACAACCTCAATTTTTGGTCGAATTCATT---- 1333468 Query 400651 ACTCCACTATTAAAAGCCACCAAAGGAAAAGGTAAAACAAAACAAGTTGTTGCATTTACA 400710 ||||| | ||||| || ||||| || | | || || ||| || || ||| Sbjct 1333469 ACTCCGATCGTAAAATGCA-AAAAGGGAAGTGCAGAA-AAGACA--TT-----CTTCACA 1333519 Query 400711 AGTCCCCAATCTTTTGAGGAATGGAAAAAGGAAAACAATGACGGAAAAGGATGGTCAATC 400770 | ||| || | ||||| |||||| | |||||| | | || ||||||||| ||||| Sbjct 1333520 ATGCCCGAA---TATGAGGTATGGAAGGAAGAAAACGCTCAAGGCAAAGGATGGACAATC 1333576 Query 400771 AAATATTACAAAGGATTAGGTAC 400793 ||||| ||||| || || ||||| Sbjct 1333577 AAATACTACAAGGGTTTGGGTAC 1333599 Score = 102 bits (112), Expect = 6e-16 Identities = 92/114 (81%), Gaps = 4/114 (4%) Strand=Plus/Plus Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192 ||||| |||||||| | ||||| |||||||||||| | ||| ||||||| | |||||| Sbjct 1450208 GAATTCTTCTTCCATGCTATGGCAGGTCGTGAAGGTTTGATTGATACAGCCGTCAAAACT 1450267 Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTT--GAAGATATTA 435244 ||||| |||||||| |||||||||| | | |||| | |||| |||||| ||| Sbjct 1450268 GCTGAAACTGGTTACATTCAAAGAAGATTGGTCA--AAGCTTTGGAAGATGTTA 1450319 Score = 91.5 bits (100), Expect = 1e-12 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 432287 AGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACG 432346 |||||||||||| ||| | | || || |||||||||||||||||||| | || || || Sbjct 1448764 AGGTAAAGAAGGACGTTTGCGTGGGAACTTGATGGGAAAGCGTGTCGACTTCTCGGCTCG 1448823 Query 432347 TACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTAT 432406 ||| ||||||||| |||||| ||| | | | || |||||||||| || | ||| Sbjct 1448824 TACTGTTATTACTGGTGATCCAAATTTGGAATTGGATCAAGTTGGTGTGCCAAAAAGTAT 1448883 Query 432407 TGCGAAAAAT 432416 ||| | |||| Sbjct 1448884 TGCAAGAAAT 1448893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740627552445108