Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2 244 3e-59 seq4 89.7 1e-12 >seq2 Length=3834998 Score = 244 bits (270), Expect = 3e-59 Identities = 561/839 (67%), Gaps = 7/839 (1%) Strand=Plus/Minus Query 110307 TTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTGAA 110366 ||||||||||| || || ||||| | || | | ||| ||||||| | | |||| Sbjct 3101077 TTTGGTTTCAAGACCCTAGAACGATCATACCTTTTGCGTATCAATGGAAAAGTTGCTGAA 3101018 Query 110367 CGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAAGCT 110426 | || ||||| ||||| | |||||||| |||||||||| ||| | ||| || | ||| Sbjct 3101017 AGACCACAACATATGTTGATGCGTGTTGCCGTTGGTATTCACGGAGAAGATGTTGATGCT 3100958 Query 110427 GTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCTA 110486 | |||||| || | | || ||| ||||| | || ||||| | || ||||| Sbjct 3100957 GCAATTGAAACATACAACCTTTTGAGTGAAAAGTACTTTACACATGCATCACCAACCCTT 3100898 Query 110487 TTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGAT 110546 || || || || ||| || |||| || | || ||||| | | || || ||| Sbjct 3100897 TTCAATGCTGGTACTCCAAGACCACAAATGTCCTCATGCTTCTTGGTTTCCATGAAAGAT 3100838 Query 110547 GATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCT 110606 ||||| ||||| |||||||||||| | || ||| ||| | ||||| || | | Sbjct 3100837 GATTCCATTGATGGTATTTATGATACACTCAAAATTTGTGCAATGATTTCCAAGAGTGCA 3100778 Query 110607 GGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCG 110666 || || || || | || |||| | |||||| || |||| || | || ||| | Sbjct 3100777 GGTGGTATCGGATTAAACATTCACAACATTCGCGGAACAGGATCATACATTGCAGGTACA 3100718 Query 110667 AAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATAT 110726 || || | | || | || || ||||| | || || ||| ||||| ||| Sbjct 3100717 AACGGAACAAGTAACGGTATCGTACCTATGTTGCGTGTATTTAACACAACTGCTCGTTAT 3100658 Query 110727 GTGAATCAAGGTGGTAA---GAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCAT 110783 || ||||||| ||||| |||| || | ||||| | || | ||||| |||||| Sbjct 3100657 GTTGATCAAGGAGGTAACAAGAGACCGGGTGCTTTTGCCGTTTACGTTGAACCATGGCAT 3100598 Query 110784 TCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCA 110843 |||||| | ||||||||||| || | || |||||||| ||| |||||| | ||| Sbjct 3100597 TCAGATGTGTTTGAATTCTTGGATTTACGCAAAAATCACGGAAAAGAAGAAGTTCGTGCA 3100538 Query 110844 CGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAAT 110903 ||||| |||| ||||| | |||||| |||| || |||||||| |||||| || ||||| Sbjct 3100537 CGTGAACTATTCTATGCTCTATGGATTCCAGACTTGTTCATGAAGCGTGTTGAACAAAAT 3100478 Query 110904 GGCATGTGGTCTCTTATGTGTCCTCATCG-TTCTCCTGGTCTATCTGATGTATATGGAAA 110962 || |||| | ||||| || || || || |||||| | ||||| || || | Sbjct 3100477 GGTGAATGGTGCTTGATGTG-CCCCAACGAATCCCCTGGTTTGGCTGATTGTTACGGTGA 3100419 Query 110963 AGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAA-ATTC 111021 ||| |||||| | |||||||| || ||||| ||||| || | | ||| || || Sbjct 3100418 AGAATTTGAAAAACTTTACGAGTCTTACGAAAAGCAAGGC-AGATATGTAAAGAAGATCA 3100360 Query 111022 CAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATA 111081 ||| ||| | | |||| || |||||||| ||| ||||||||| | || | | Sbjct 3100359 AAGCACAAAAGTTGTGGTATGCTATTCTTGAATCTCAAACTGAAACTGGTAACCCATTCA 3100300 Query 111082 TTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAG 111140 | ||||| |||||| || | ||| ||| |||| |||||| || || || ||| Sbjct 3100299 TGTTGTACAAAGATGCAGCAAACAGAAAAAGTAACCAAAAGAATTTGGGTACCATCAAG 3100241 Score = 102 bits (112), Expect = 2e-16 Identities = 220/322 (68%), Gaps = 8/322 (2%) Strand=Plus/Plus Query 131864 GTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGG 131923 || ||||||||| ||||||||||| ||||| ||| | ||| |||||| ||| Sbjct 1007612 GTCGCTTTTGCTGCCGTTGAAGGTATCTTCTTCAGTGGTTCATTCGCAAGTATCTTCTGG 1007671 Query 131924 CTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGAT 131983 || |||||||||||||||||||| || | |||| |||||| |||| ||| |||||| Sbjct 1007672 CTCAAGAAGCGTGGATTGATGCCCGGTTTGACATTCTCCAATGAATTGATCAGCAGAGAT 1007731 Query 131984 GAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTGATAAACTTGAT 132043 |||| || || ||||| || || || || | | |||||| ||| | | | Sbjct 1007732 GAAGGTTTACACACTGATTTCGC-ATGTTTGTTGTTCAGCCATTTGC--GTAAGCGCGCT 1007788 Query 132044 GAAAATAAT--ATTAAACAA-CTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATT 132100 | | || | | ||||| |||| | ||||| || ||||| | ||||| || Sbjct 1007789 CATCCTGATACAGTGAACAAGATTATCACAGAAGCTGTCTCAATCGA-ACAAAGTTTCTT 1007847 Query 132101 -ACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTATGAAGGAGTACAT 132159 || || ||||| || ||||| || || || ||||| | | | ||| | ||||| Sbjct 1007848 AACTGATGCTTTACCATGCAACTTAATCGGAATGAACTCCAAATTGATGTGTCAATACAT 1007907 Query 132160 TGAATTCGTTGCTGATCGTTTA 132181 ||||||| |||||||||| || Sbjct 1007908 TGAATTCTGTGCTGATCGTCTA 1007929 >seq4 Length=1961900 Score = 89.7 bits (98), Expect = 1e-12 Identities = 178/262 (68%), Gaps = 4/262 (2%) Strand=Plus/Plus Query 279875 GATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGAAAATTGGTA 279934 ||||| || |||||| || ||||| | || ||| ||| ||||| |||||| | | Sbjct 1333868 GATGGCTTAAAACCTGGTCAACGTAAAGTCATGTTCTCTTGCTTCAAGAGAAAACTC--A 1333925 Query 279935 AAGG--AAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGTTATCATC 279992 | || |||| || | | || | || ||||| | ||| ||||||| ||| |||| Sbjct 1333926 AGGGCGAAATCAAAGTAGGTTCCTTGTCCGGCTATGTATTAGAGCATGCAGCTTACCATC 1333985 Query 279993 ACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTATGGCTTCAA 280052 |||||||| | | | ||| ||||||| | | |||||||| ||| | | ||| Sbjct 1333986 ACGGTGAAACAAGTTTGCAAATGACTATTGTCAATTTGGCCCAAGACTTTGTTGGAGCAA 1334045 Query 280053 ACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTATTCACAATGGAAAAG 280112 |||| | ||| | |||| |||||| |||||||| ||| | ||||| || |||| Sbjct 1334046 ACAATGTCAATATCCTTTTACCAAACGGTCAATTCGGTACGCGTATGATGGGAGGTAAAG 1334105 Query 280113 ATCATGGTAGTGCTCGTTACAT 280134 || || | ||||||||||| Sbjct 1334106 ATGCTGCTTCCGCTCGTTACAT 1334127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186811918049738