Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1 136 3e-27 seq3 132 3e-26 >seq1 Length=6968282 Score = 136 bits (150), Expect = 3e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| |||||||| || | || || ||||| ||||||||||| | Sbjct 6898483 CCACCACGAAGACGCAACACCAAGTGCAAGGTAGATTCCTTTTGGATGTTGTAATCAGCC 6898424 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || |||| ||||||||||| || ||||| |||||||| || || ||| |||| Sbjct 6898423 AAAGTACGGCCGTCTTCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCTGGCGGG 6898364 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||||||| ||| || | || |||| ||| | |||||| ||||| || Sbjct 6898363 ATACCTTCTTTGTCTTGAATCTT-GGCTTTGACATTGTCAATCGTGTCGGAAGATTCAAC 6898305 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | |||||||| || ||||| || ||||| |||||||| |||||| Sbjct 6898304 TTCCAATGTGATCGTCTTTCCTGTCAATGTTTTGACAAAGATTTGCATA 6898256 Score = 120 bits (132), Expect = 2e-22 Identities = 168/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| || ||||| || | ||| || ||||| ||||||||||| | Sbjct 5660980 CACCACCACGGAGACGCAAGACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAATCAG 5661039 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || || | || |||||||| || || ||||| || ||||| || || ||| | | Sbjct 5661040 CCAAAGTACGCCCATCTTCCAATTGCTTACCAGCAAAGATTAAACGTTGTTGGTCTGGTG 5661099 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | |||||| ||||| ||| || || | ||||| ||| | || ||| ||||||| Sbjct 5661100 GAATACCTTCCTTGTCTTGAATCTT-TGCCTTAACATTGTCAATAGTATCGTTTGATTCA 5661158 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 || || | ||||| |||||||| || | ||||||||||| || ||||| || Sbjct 5661159 ACCTCGAGGGTGATTGTTTTACCCGTAAGGGTTTTTACAAAAATTTGCATGGT 5661211 Score = 116 bits (128), Expect = 2e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | || || ||||| || || || ||||| || ||||||||||| | Sbjct 6898028 ACCACCACGGAGGCGCAAGACCAAGTGGAGTGTAGATTCTTTCTGAATGTTGTAATCAGC 6897969 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||||| |||| ||||||||||| || ||||| |||||||| || || ||| | || Sbjct 6897968 CAATGTGCGTCCGTCTTCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCTGGTGG 6897909 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| || || | || || | || | |||||||| ||| | Sbjct 6897908 GATACCTTCTTTGTCTTGGATCTT-GGCTTTGACGTTRTCAATAGTGTCGCTGCTTTCGA 6897850 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || ||||||| || || ||||| || |||||| Sbjct 6897849 CTTCTAGTGTGATTGTCTTTCCTGTTAGTGTCTTGACAAAAATTTGCATA 6897800 Score = 114 bits (126), Expect = 8e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| || |||||||||| ||| ||||||||| |||||||| || | Sbjct 6898256 ACCACCACGGAGACGCAATACCAAATGTAAGGTGGACTCTTTTTGGATGTTGTAGTCAGC 6898197 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||||| |||| |||||||| || || || ||||| | ||| || || ||| | || Sbjct 6898196 CAATGTGCGTCCGTCTTCCAATTGCTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGG 6898137 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| || || | || |||| || | || || || ||| | Sbjct 6898136 AATACCTTCTTTGTCTTGGATCTT-GGCTTTGACATTATCAATTGTATCACTGCTTTCGA 6898078 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || ||||| || | || || |||||||| |||||| Sbjct 6898077 CTTCTAGTGTGATTGTCTTACCAGTAAGTGTCTTGACAAAGATTTGCATA 6898028 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| |||||||| || || ||| ||| ||||| |||||||| || | Sbjct 6897800 ACCACCACGGAGACGCAACACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGC 6897741 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| |||| |||||||| || |||||||| ||||| | || || ||| | || Sbjct 6897740 CAAAGTGCGACCGTCTTCCAATTGCTTACCGGCAAAGATCAATCTTTGTTGGTCTGGTGG 6897681 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| || || | || |||| ||| | || || ||||| | Sbjct 6897680 GATACCTTCTTTGTCTTGGATCTT-GGCTTTGACATTGTCAATAGTATCAGAGGATTCAA 6897622 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| || || || ||||| || || || || |||||||| ||||| Sbjct 6897621 CCTCAAGGGTAATTGTCTTACCAGTCAAGGTCTTGACAAAGATTTGCAT 6897573 >seq3 Length=3165745 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || | ||| || || || | ||| |||||||| |||||||| ||||||||||||| Sbjct 2529686 CCGCCACGCAAGCGCAAAACGAGATGAAGAGTGCTTTCTTTTTGAATGTTGTAATCGGCC 2529627 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||| ||| |||| || |||||||| || ||||| |||||||| || || ||| | || Sbjct 2529626 AATGTACGTCCGTCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGTGGA 2529567 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACG 33702 | ||||||||| || ||| || ||| | || | || || ||||||||| Sbjct 2529566 ATACCTTCTTTATCCTGAATCTTGGCTTTGACGTTATCGATTGTATCAGATGATTCCACC 2529507 Query 33703 TCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | || || ||||| || || || || || |||||||| |||||| Sbjct 2529506 TCCAAGGTAATAGTTTTTCCCGTCAATGTCTTGACAAAGATTTGCATA 2529459 Score = 120 bits (132), Expect = 2e-22 Identities = 175/245 (71%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || | || || | ||| || ||||| || ||||| || |||||||||| Sbjct 2529459 ACCACCACGTAATCTCAAAACGAGATGGAGTGTGCTTTCCTTTTGGATATTGTAATCGGC 2529400 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| || | || |||||||| || || ||||| || | ||| || |||||| | || Sbjct 2529399 CAATGTACGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGTTGATCTGGTGG 2529340 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| ||| || | | || | ||| | ||| || ||||| | Sbjct 2529339 AATACCTTCTTTGTCTTGAATCTT-GGCCTTGACGTTGTCAATGGTATCCGAAGATTCAA 2529281 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTGTGT 33760 | || | |||||||| || || || || |||||||||||||| |||||||| | || Sbjct 2529280 CCTCCAAAGTGATCGTCTTTCCGGTCAAAGTTTTTACAAAGATTTGCATAGTGGCGTTGA 2529221 Query 33761 TTATC 33765 ||||| Sbjct 2529220 TTATC 2529216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703767647360