Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1 127 5e-24 seq3 120 7e-22 >seq1 Length=6968282 Score = 127 bits (140), Expect = 5e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| |||||| | |||||||| |||||||| |||||||| ||| ||| ||| Sbjct 6898260 CAAATCTTTGTCAAAACATTGACAGGAAAGACGATCACATTGGAAGTTGAATCTTCCGAC 6898319 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || ||||| || ||||||||| |||||||| || ||| ||| || Sbjct 6898320 ACGATTGACAATGTCAAAGCCAA-GATTCAAGACAAAGAAGGTATCCCGCCAGACCAACA 6898378 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | | ||||| || || || || |||||||| || | |||||||| ||||||||| | Sbjct 6898379 ACGTTTGATCTTTGCAGGTAAACAATTGGAAGACGGCCGTACTTTGGCTGATTACAACAT 6898438 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| || || ||||| | ||| | || ||| | ||||| Sbjct 6898439 CCAAAAGGAATCTACCTTGCACTTGGTGTTGCGTCTTCG 6898477 Score = 113 bits (124), Expect = 1e-19 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 ||||| || || ||||| | || ||||| || |||||| |||| || ||| Sbjct 595350 ACAGGTAAGACCATCACCCTTGAGGTGGAGTCATCCGACACAATCGACAACGTCAAGGCT 595409 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || ||||||||| || ||| ||| | | ||||| || |||||| Sbjct 595410 AAGATCCAAGACAAGGAAGGAATTCCACCAGACCAACAACGTTTGATCTTTGCTGGAAAG 595469 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || ||||||||||| || |||||||| ||||||||| |||| || || |||||| | ||| Sbjct 595470 CAATTGGAAGATGGCAGAACTTTGGCTGATTACAACATCCAAAAGGAATCTACTTTGCAC 595529 Score = 87.8 bits (96), Expect = 4e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||||||| || ||||| ||| || ||| ||| | | ||||| Sbjct 5661133 GTTAAGGCAAAGATTCAAGACAAGGAAGGTATTCCACCAGACCAACAACGTTTAATCTTT 5661074 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | |||||||| ||||||||| |||| || || || Sbjct 5661073 GCTGGTAAGCAATTGGAAGATGGGCGTACTTTGGCTGATTACAACATCCAAAAGGAATCC 5661014 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || | ||| | || ||| | || || Sbjct 5661013 ACCTTGCACTTGGTCTTGCGTCTCCG 5660988 >seq3 Length=3165745 Score = 120 bits (132), Expect = 7e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || ||||| |||||||||||||| || ||| ||| || || | || Sbjct 2529247 AAAACTTTGACCGGAAAGACGATCACTTTGGAGGTTGAATCTTCGGATACCATTGACAAC 2529306 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||||||||| |||||||| ||| || || ||| | |||||||| Sbjct 2529307 GTCAAGGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTTATCTTT 2529366 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | || |||||||||||||| |||| || || Sbjct 2529367 GCTGGTAAGCAATTGGAAGATGGTCGTACATTGGCCGATTACAATATCCAAAAGGAAAGC 2529426 Query 206365 ACTCTTCACCTTGTTTTGAGA 206385 || || || || ||||||||| Sbjct 2529427 ACACTCCATCTCGTTTTGAGA 2529447 Score = 113 bits (124), Expect = 1e-19 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || | || |||||||| || || ||||| |||||| ||||| Sbjct 2529463 CAAATCTTTGTCAAGACATTGACGGGAAAAACTATTACCTTGGAGGTGGAATCATCTGAT 2529522 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| |||| || ||||| || |||||| || |||||||| ||| || ||| || Sbjct 2529523 ACAATCGATAACGTCAAAGCCAA-GATTCAGGATAAAGAAGGTATTCCACCAGACCAACA 2529581 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | | ||||| || || || || || ||||| ||| | || ||||||||||||||| | Sbjct 2529582 ACGTTTGATCTTTGCTGGTAAACAATTAGAAGACGGACGTACATTGGCCGATTACAACAT 2529641 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTG 206382 || ||||| |||||||| || |||||| Sbjct 2529642 TCAAAAAGAAAGCACTCTTCATCTCGTTTTG 2529672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181819921759418