Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq2 100 3e-16 seq3 87.8 2e-12 seq1 87.8 2e-12 >seq2 Length=3834998 Score = 100 bits (110), Expect = 3e-16 Identities = 254/380 (67%), Gaps = 15/380 (4%) Strand=Plus/Plus Query 137032 GTGAACGGCTCGAACGATTCGTTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATG 137091 ||||| || || || |||| ||| || ||||| || || | || || |||||| Sbjct 3099648 GTGAAAGGTTCAAAGCATTCATTGAATCCTAAAATTTGACTGGTAGAAGCAGTAGGCATG 3099707 Query 137092 TAAGCGATCAACAATGAATTCCGTAAACCGTGTACGGCCAATTGTTGCTTGAGCTCTTTC 137151 || | ||| | ||||| ||||||||||| | || | | || || || || | Sbjct 3099708 GGTGCCAACAATAGCGAATTACGTAAACCGTGCTCTGCAATCTTTTCTTTTAGTTCAGAC 3099767 Query 137152 CAGTTCCACAGATTGTTCGATTGGGTTATATTCCACAAATCAAACTGCAAAAGTCCGCGA 137211 |||||||| |||| | ||| | |||| ||||||| ||| | || || ||| | Sbjct 3099768 CAGTTCCATAGATCG---GATGGTGTTACGTTCCACATGTCATATTGTAATTCTCCCTTA 3099824 Query 137212 CTTGCAGGACTTTCTGCATAAGAATCATATGTTCCGTGCAGTTTCGCCAGTTC---AATA 137268 |||||||| | | | || | ||||||||||| ||| |||| ||| | | Sbjct 3099825 CTTGCAGGGGATCCCTCGTATGTTTCATATGTTCCTAATTCTTTAGCCAATTCGCAACTT 3099884 Query 137269 CTCTGGACTAGTGCGCCATAGTAAATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCT 137328 |||| | | || ||| ||| || ||||| |||||| ||||||| | ||| Sbjct 3099885 CTCT---CCAAAGCAGCATGGTAGATCGTTTCAAAGATTTGAACGTTCAATTTGCGTGCT 3099941 Query 137329 TCTTGGCTG--TCGTAGGGCATATCCAATATAGCGAAAGCATCTGCAAGTCC-TTGAATA 137385 || || || ||| |||||||| |||| || ||| ||||||||||| || |||| | Sbjct 3099942 TC--GGGTGAATCGAAGGGCATACCCAAGATCATGAATGCATCTGCAAGACCGTTGACT- 3099998 Query 137386 CCGATACCGATAGGTCTGTG 137405 |||||||||||||| | ||| Sbjct 3099999 CCGATACCGATAGGACGGTG 3100018 >seq3 Length=3165745 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||||||||| || |||||||| ||||||| | || || ||| | Sbjct 2529232 ATGCAAATCTTTGTAAAAACTTTGACCGGAAAGACGATCACTTTGGAGGTTGAATCTTCG 2529291 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || || ||| || ||||| ||||| || || ||||| Sbjct 2529292 GATACCATTGACAACGTCAAGGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGATCAA 2529351 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | || || | | || || ||| | ||||||| | | | | |||||||||| Sbjct 2529352 CAACGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGTACATTGGCCGATTACAAT 2529411 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATT 25392 || ||||| ||| ||| | ||| | || || ||||| Sbjct 2529412 ATCCAAAAGGAAAGCACACTCCATCTCGTTTTGAGATT 2529449 >seq1 Length=6968282 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 || ||||||| | ||||||||||| | || || ||| | ||||| |||| || ||| | Sbjct 5661212 CACCATGCAAATTTTTGTAAAAACCCTTACGGGTAAAACAATCACCCTCGAGGTTGAATC 5661153 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 ||||||||||| || | || || ||| ||| || || || ||||| || || || Sbjct 5661152 AAACGATACTATTGACAATGTTAAGGCAAAGATTCAAGACAAGGAAGGTATTCCACCAGA 5661093 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 || ||| | | || | | || || ||| | ||||||| | | | | ||||| Sbjct 5661092 CCAACAACGTTTAATCTTTGCTGGTAAGCAATTGGAAGATGGGCGTACTTTGGCTGATTA 5661033 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 ||| || ||||| ||||||||| | || || || || Sbjct 5661032 CAACATCCAAAAGGAATCCACCTTGCACTTGGTCTT 5660997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445094077306560