Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 8e-16 seq1 91.5 1e-13 >seq3 Length=3165745 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| ||||| ||||| ||||| || ||||| || || |||| ||| | Sbjct 2529232 ATGCAAATCTTTGTAAAAACTTTGACCGGAAAGACGATCACTTTGGAGGTTGAATCTTCG 2529291 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | | || || || ||| ||||||||||| | || |||||| Sbjct 2529292 GATACCATTGACAACGTCAAGGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGATCAA 2529351 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | ||||| | ||| || || ||||| |||||| | || ||| ||||||||| Sbjct 2529352 CAACGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGTACATTGGCCGATTACAAT 2529411 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || ||||| ||| ||||| ||| | || ||||| ||||| || || Sbjct 2529412 ATCCAAAAGGAAAGCACACTCCATCTCGTTTTGAGATTACGTGGTGG 2529458 >seq1 Length=6968282 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| ||||| || || |||||||| ||||| |||||| | || ||| || Sbjct 6897573 ATGCAAATCTTTGTCAAGACCTTGACTGGTAAGACAATTACCCTTGAGGTTGAATCCTCT 6897632 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | | || ||| || || ||||||||||| | || || ||| Sbjct 6897633 GATACTATTGACAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 6897692 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| | || | ||| || || ||||| ||||| | ||| ||| || |||||| Sbjct 6897693 CAAAGATTGATCTTTGCCGGTAAGCAATTGGAAGACGGTCGCACTTTGGCTGACTACAAC 6897752 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTG 106472 || ||||| || || ||||| || || || ||| Sbjct 6897753 ATCCAAAAGGAGTCCACACTTCACTTGGTGTTG 6897785 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| ||||| ||||||||||| || ||||| || || ||||| ||| | | Sbjct 6898257 ATGCAAATCTTTGTCAAAACATTGACAGGAAAGACGATCACATTGGAAGTTGAATCTTCC 6898316 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | | || ||| || ||| ||||||||||| | || || ||| Sbjct 6898317 GACACGATTGACAATGTCAAAGCCAAGATTCAAGACAAAGAAGGTATCCCGCCAGACCAA 6898376 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | || | ||| || |||||||| ||||| ||| ||| ||||||||| Sbjct 6898377 CAACGTTTGATCTTTGCAGGTAAACAATTGGAAGACGGCCGTACTTTGGCTGATTACAAC 6898436 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTG 106472 || ||||| |||||||| | || || || ||| Sbjct 6898437 ATCCAAAAGGAATCTACCTTGCACTTGGTGTTG 6898469 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||| || ||| | || || ||||| || || | ||| ||| | || Sbjct 6897801 ATGCAAATTTTTGTCAAGACACTAACAGGAAAGACAATCACACTAGAAGTCGAAAGCAGC 6897860 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || || ||| | || ||| || || ||||||||||| | || || ||| Sbjct 6897861 GACACTATTGAYAACGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 6897920 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | || | ||| || |||||||| ||||| || ||| ||||||||| Sbjct 6897921 CAACGTTTGATCTTTGCAGGTAAACAATTGGAAGACGGACGCACATTGGCTGATTACAAC 6897980 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTG 106472 || || |||||||||||||| || || || ||| Sbjct 6897981 ATTCAGAAAGAATCTACACTCCACTTGGTCTTG 6898013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402329315603264