Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq2 147 2e-30 seq1 140 3e-28 seq3 122 9e-23 >seq2 Length=3834998 Score = 147 bits (162), Expect = 2e-30 Identities = 478/735 (65%), Gaps = 8/735 (1%) Strand=Plus/Minus Query 8233 GCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGC 8292 || ||| | |||| ||||| ||||| |||| || | |||| |||||||||| || Sbjct 3100339 GCTATTCTTGAATCTCAAACTGAAACTGGTAACCCATTCATGTTGTACAAAGATGCAGCA 3100280 Query 8293 AACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAA 8352 ||| ||||| || |||| || |||| ||||| | || ||||| | ||| Sbjct 3100279 AACAGAAAAAGTAACCAAAAGAATTTGGGTACCATCAAGAACTCTAACTTGTGCACAGAA 3100220 Query 8353 ATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTTA 8412 ||| | | ||| | || || || ||||| ||||| |||||| | || ||| | ||| Sbjct 3100219 ATTATTGAATACTGTGCACCTGATGAAGTTGCCGTGTGCAATTTGGCTTCGATTGCTTTG 3100160 Query 8413 AACGCGTTCGTTGATCGACGCTCAAACACTTACGACTTTGAACAATTGAAAAACGCCGT- 8471 | | |||||| | |||| ||||| || ||| || || | | | ||| || Sbjct 3100159 CCAACCTACGTTGACCCTGCAACAAAGACTTATGA-TTTCAAGAAGTTACA--CGCAGTT 3100103 Query 8472 GC--AAGTGA-CGGTACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGA 8528 || |||||| | || | || || | || |||||| |||||| ||| || | || Sbjct 3100102 GCCAAAGTGATCTGTG-GTAACTTGAACAAAATTATTGATATCAATTATTACCCAGTCGA 3100044 Query 8529 AGAAGCGCGCGTATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGC 8588 |||||| ||| ||| |||||||| ||| | || | || | || || | ||||| || Sbjct 3100043 AGAAGCACGCAGATCTAACATGCGTCACCGTCCTATCGGTATCGGAGTCAACGGTCTTGC 3099984 Query 8589 CGACGCGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACAT 8648 || || || || ||| | | |||| ||| | ||||| |||| | ||| | Sbjct 3099983 AGATGCATTCATGATCTTGGGTATGCCCTTCGATTCACCCGAAGCACGCAAATTGAACGT 3099924 Query 8649 AAAAATAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCCGAGA 8708 |||| |||||| | || | | || || || || || || | || ||| Sbjct 3099923 TCAAATCTTTGAAACGATCTACCATGCTGCTTTGGAGAGAAGTTGCGAATTGGCTAAAGA 3099864 Query 8709 ATTGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGA 8768 ||| || || || ||| | |||| ||| |||||| || ||| ||| ||||| || Sbjct 3099863 ATTAGGAACATATGAAACATACGAGGGATCCCCTGCAAGTAAGGGAGAATTACAATATGA 3099804 Query 8769 CATGTGGAATGTCACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGC 8828 ||||||||| || || || || | | ||||| ||| || | ||| || ||||| Sbjct 3099803 CATGTGGAACGTAACACCATCCGATCTATGGAACTGGTCTGAACTAAAAGAAAAGATTGC 3099744 Query 8829 TCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCA 8888 | |||||| || |||||||| ||| |||| |||||| || || | || ||| Sbjct 3099743 AGAGCACGGTTTACGTAATTCGCTATTGTTGGCACCCATGCCTACTGCTTCTACCAGTCA 3099684 Query 8889 AATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTACGTGAGACGAGT 8948 ||| | ||| ||| |||| |||||| || |||||| ||| | ||| || || || Sbjct 3099683 AATTTTAGGATTCAATGAATGCTTTGAACCTTTCACCTCAAACATCTACACAAGGCGTGT 3099624 Query 8949 GTTGGCCGGCGATTT 8963 ||| || || || || Sbjct 3099623 GTTAGCAGGAGAATT 3099609 >seq1 Length=6968282 Score = 140 bits (154), Expect = 3e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC- 134542 ||||| || | || |||||||| | ||| | || ||||||||||| |||||||| || Sbjct 6898486 TTTCCACCACGAAGACGCAACACCAAGTGCAAGGTAGATTCCTTTTGGATGTTGTAATCA 6898427 Query 134543 GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGG 134602 ||||| || | ||| || | ||||| |||||||| |||||||| || || || || Sbjct 6898426 GCCAA-AGTACGGCCGTCTTCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCTGG 6898368 Query 134603 CGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTC 134662 ||| || |||||||| |||||||| || |||||| ||| | |||||||| ||||| Sbjct 6898367 CGGGATACCTTCTTTGTCTTGAATCTTGGCTTTGACATTGTCAATCGTGTCGGAAGATTC 6898308 Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | || || || || || || || ||||| || || |||||||| Sbjct 6898307 AACTTCCAATGTGATCGTCTTTCCTGTCAATGTTTTGACAAAGATTTGCAT 6898257 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || || | ||| |||||||| | ||| || ||||| |||||||| ||||||||||| ||| Sbjct 6897799 CCACCACGGAGACGCAACACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGCC 6897740 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || ||| || ||| || | || || || ||||| ||||| | || || || || || Sbjct 6897739 AA-AGTGCGACCGTCTTCCAATTGCTTACCGGCAAAGATCAATCTTTGTTGGTCTGGTGG 6897681 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || |||||||| ||||| || || |||||| ||| | || || || ||||| || Sbjct 6897680 GATACCTTCTTTGTCTTGGATCTTGGCTTTGACATTGTCAATAGTATCAGAGGATTCAAC 6897621 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||| || ||||| || || || || || || |||||||| Sbjct 6897620 CTCAAGGGTAATTGTCTTACCAGTCAAGGTCTTGACAAAGATTTGCAT 6897573 Score = 113 bits (124), Expect = 5e-20 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || || | ||| ||||| || | ||| || || ||||| || ||||||||||| || ||| Sbjct 6898027 CCACCACGGAGGCGCAAGACCAAGTGGAGTGTAGATTCTTTCTGAATGTTGTAATCAGCC 6897968 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | || | ||| || | ||||| |||||||| |||||||| || || || || || Sbjct 6897967 AATG-TGCGTCCGTCTTCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCTGGTGG 6897909 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || |||||||| ||||| || || |||||| || | |||||| ||| || Sbjct 6897908 GATACCTTCTTTGTCTTGGATCTTGGCTTTGACGTTRTCAATAGTGTCGCTGCTTTCGAC 6897849 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || || |||| || || || ||||||||||| Sbjct 6897848 TTCTAGTGTGATTGTCTTTCCTGTTAGTGTCTTGACAAAAATTTGCAT 6897801 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || || | ||| ||||| || | ||| | |||||||||||||| |||||||| || ||| Sbjct 5660982 CCACCACGGAGACGCAAGACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAATCAGCC 5661041 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | | || || | || || || ||||| || ||||| || || || || || Sbjct 5661042 AAAG-TACGCCCATCTTCCAATTGCTTACCAGCAAAGATTAAACGTTGTTGGTCTGGTGG 5661100 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || |||||||| ||| || || ||| | || ||| ||||| || Sbjct 5661101 AATACCTTCCTTGTCTTGAATCTTTGCCTTAACATTGTCAATAGTATCGTTTGATTCAAC 5661160 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || |||||||| || | ||||| || ||||||||||| Sbjct 5661161 CTCGAGGGTGATTGTTTTACCCGTAAGGGTTTTTACAAAAATTTGCAT 5661208 Score = 100 bits (110), Expect = 3e-16 Identities = 128/174 (74%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCC 134575 || ||||||||||| |||||||| || ||||| | | || | || || | || || || Sbjct 595522 GTAGATTCCTTTTGGATGTTGTAATCAGCCAAAGTTCTGCCA-TCTTCCAATTGCTTTCC 595464 Query 134576 TGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTT 134635 ||||| |||||||| || || || || || || ||||| || ||||| || || || Sbjct 595463 AGCAAAGATCAAACGTTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGCCTT 595404 Query 134636 GACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||| ||| | ||||||||| || ||||| || || || ||||| ||||| || Sbjct 595403 GACGTTGTCGATTGTGTCGGATGACTCCACCTCAAGGGTGATGGTCTTACCTGT 595350 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || || | ||| ||||| || | |||| ||||| || ||||| ||||||||||| ||| Sbjct 6898255 CCACCACGGAGACGCAATACCAAATGTAAGGTGGACTCTTTTTGGATGTTGTAGTCAGCC 6898196 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || ||| | ||| || | || || || || ||||| | ||| || || || || || Sbjct 6898195 AA-TGTGCGTCCGTCTTCCAATTGCTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGG 6898137 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || |||||||| ||||| || || |||||| || | ||| || ||| || Sbjct 6898136 AATACCTTCTTTGTCTTGGATCTTGGCTTTGACATTATCAATTGTATCACTGCTTTCGAC 6898077 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || ||||| || | || || || || |||||||| Sbjct 6898076 TTCTAGTGTGATTGTCTTACCAGTAAGTGTCTTGACAAAGATTTGCAT 6898029 >seq3 Length=3165745 Score = 122 bits (134), Expect = 9e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558 ||||| ||||| || || ||| ||| |||||||||||||| ||| | | || | | Sbjct 2529674 CGCAAAACGAGATGAAGAGTGCTTTCTTTTTGAATGTTGTAATCGGCCAATGTACGTCCG 2529615 Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || | ||||| || ||||| |||||||| || || || || || || |||||||| Sbjct 2529614 TCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGTGGAATACCTTCTTTA 2529555 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 || ||||| || |||||| || | ||| || || |||||||| || | ||||| Sbjct 2529554 TCCTGAATCTTGGCTTTGACGTTATCGATTGTATCAGATGATTCCACCTCCAAGGTAATA 2529495 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || || || || |||||||| Sbjct 2529494 GTTTTTCCCGTCAATGTCTTGACAAAGATTTGCAT 2529460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398033586160