Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2 363 2e-95 >seq2 Length=3834998 Score = 363 bits (402), Expect = 2e-95 Identities = 1443/2239 (64%), Gaps = 59/2239 (3%) Strand=Plus/Plus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 || ||| ||||||||| || || | || || || | ||| ||||||||||||| Sbjct 3099279 GCAGGTCTTGTACGTAAGTAATAAGTTCCCGTCTTTAATCCTTTCTTCCATCCGTAGAAG 3099338 Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514 ||||||||||| | || | | | || || || ||| || |||| ||||||| Sbjct 3099339 TGCATACTTGTCAATTGACCAAATGTAGGTGCGCTTAAATGGATGTTCAAACTTTGACTT 3099398 Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCC 68574 || ||||| ||||| | ||| || ||||| | || || |||||| |||||| Sbjct 3099399 TGGCAAATGAATGCTCCACGATCGGCTGCCATATCAATGATTGCTTTTTGACTGATTTCC 3099458 Query 68575 CAAATAGTCTTAAA-AATCTGTTTGATATCATCTGGAAGGCTCGTA---TTTTGAATGGA 68630 |||| ||||| | ||||| ||||||||||||||||| | | | |||||||| || Sbjct 3099459 CAAACGGTCTTGTACAATCT-TTTGATATCATCTGGAATTCCTGGAACGTTTTGAATTGA 3099517 Query 68631 TCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAA 68690 |||||||| | || ||| | ||||| || || ||| | | | ||| || Sbjct 3099518 TCCACCATGAGCAATGATTCTGTTCTTCATTGTTTCTGACCATAGTCCTTGTTCCACCAA 3099577 Query 68691 AACTC-TAAGGAG-ATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTG 68748 | ||| | ||| | ||||| | ||| ||||| || | |||||| | | ||| Sbjct 3099578 TGTACGTAATAACCATGGG--TTAACAACTTGGAATTCTCCTGCTAACACACGCCTTGTG 3099635 Query 68749 TAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGAT 68808 || || || ||| | ||||| | ||||||| ||| | ||||||| || || Sbjct 3099636 TAGATGTTTGAGGTGAAAGGTTCAAAGCATTCATTGAATCCTAAAATTTGACTGGTAGAA 3099695 Query 68809 GCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATG--ATTTTAT 68866 ||||| ||||| ||||||| ||||| ||| | | ||| ||| | || || || | Sbjct 3099696 GCAGTAGGCATGGGTGCCAACAATAGCGAATTACGTAAACC--GTGCTCTGCAATCTTTT 3099753 Query 68867 CTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTA 68926 ||||||| | ||| | ||| ||||| |||||| || ||||| | || ||||||| Sbjct 3099754 CTTTTAGTTCAGACCAGTTCCATAGATCGGATGGTGTTACGTTCCACATGTCATATTGTA 3099813 Query 68927 GAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTA 68986 ||| ||||||||| ||||| | ||||||||||| | |||| | || ||| | Sbjct 3099814 ATTCTCCCTTACTTGCAGGGGATCCCTCGTATGTTTCATATGTTCCTAATTCTTTAGCCA 3099873 Query 68987 GTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGAT 69046 ||| |||||| ||| || ||| | | || || ||||| || || | || | | Sbjct 3099874 ATTCGCAACTTCTCTCCAAAGCAGCATGGTAGATCGTTTCAAAGATTTGAACGTTCAATT 3099933 Query 69047 CTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCT 69106 ||||||| | |||||| || | || | || ||||||||||| | || | Sbjct 3099934 TGCGTGCTTCGGGTGAATCGAAGGGCATACCCAAGATCATGAATGCATCTGCAAGACCGT 3099993 Query 69107 GAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGAT 69166 || || ||||||||||| | || | | | || || || |||||| | || | Sbjct 3099994 TGACTCCGATACCGATAGGACGGTGACGCATGTTAGATCTGCGTGCTTCTTCGACTGGGT 3100053 Query 69167 AATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTA 69226 ||||||| ||||| |||||||| || | || | | ||||| | || | | || Sbjct 3100054 AATAATTGATATCAATAATTTTGTTCAAGTTACCACAGATCACTTTGGCAACTGCGTGTA 3100113 Query 69227 GTTTGAGAAAATCAAATCGTCCATCTATAACA-----AACATA--TT--CAGTGCTACAG 69277 || |||||| | ||| | | | || ||| || || || || | | Sbjct 3100114 ACTTCTTGAAATCATAA-GTC--TTTGTTGCAGGGTCAACGTAGGTTGGCAAAGCAATCG 3100170 Query 69278 ATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCA---TATTGTATTATCTCTGTAC 69334 | || | ||| || || || || |||| || |||| |||| || || ||||| | Sbjct 3100171 AAGCCAAATTGCACACGGCAACTTCATCAGG---TGCACAGTATTCAATAATTTCTGTGC 3100227 Query 69335 ATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGT 69394 | | ||| ||||| || |||| ||| | || ||||| ||| |||| || | Sbjct 3100228 ACAAGTTAGAGTTCTTGATGGTACCCAAATTCTTTTGGTTACTTTTTCTGTTTGCTGCAT 3100287 Query 69395 CCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAA 69454 | ||||| | || || || ||||||||||| | |||||||| | ||||| || | Sbjct 3100288 CTTTGTACAACATGAATGGGTTACCAGTTTCAGTTTGAGATTCAAGAATAG-----CATA 3100342 Query 69455 CGACCCTAGCATTTAT--TACGGTCTTGTA-ACGCTTCT--CTT---TTTCATATTGTGT 69506 | || | | ||| | | | |||| | || ||| ||| |||| || Sbjct 3100343 CCAC---AACTTTTGTGCTTTGATCTTCTTTACATATCTGCCTTGCTTTTCGTAAGACTC 3100399 Query 69507 ATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACA 69566 || || ||| ||||| || || || |||| |||| ||||| |||| || || || Sbjct 3100400 GTAAAGTTTTTCAAATTCTTCACCGTAACAATCAGCCAAACCAGGGGATTCGTTGGGGCA 3100459 Query 69567 CATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAG 69626 |||||| |||| || ||| | | ||| || ||||| || | || |||||||| || Sbjct 3100460 CATCAAGCACCATTCACCATTTTGTTCAACACGCTTCATGAACAAGTCTGGAATCCATAG 3100519 Query 69627 AGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGA 69685 ||| ||| || || || | | | | |||||| ||||| |||||| | ||| | Sbjct 3100520 AGC-ATAGAATAGTTCACGTGCACGAACTTCTTCTTTTCCGTGATTTTTGCGTAAATCCA 3100578 Query 69686 GAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTT 69745 || || | | ||| |||||||||||||| | || | || | | ||||||| | Sbjct 3100579 AGAATTCAAACACATCTGAATGCCATGGTTCAACGTAAACGGCAAAAGCACCCGGTCTCT 3100638 Query 69746 TATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAA 69805 | || ||||| ||||| | || | ||||| | ||| | || | || ||| || | | Sbjct 3100639 TGTTACCTCCTTGATCAACATAACGAGCAGTTGTGTTAAATACACGCAACATAGGTACGA 3100698 Query 69806 TACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAA 69865 |||| ||| | | || ||||| || | ||| || |||| || ||||||| || || Sbjct 3100699 TACCGTTACTTGTTCCGTTTGTACCTGCAATGTATGATCCTGTTCCGCGAATGTTGTGAA 3100758 Query 69866 TAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCAT 69925 | || || || || ||||| | || || || | |||||| ||| | ||| |||| Sbjct 3100759 TGTTTAATCCGATACCACCTGCACTCTTGGAAATCATTGCACAAATTTTGAGTGTATCAT 3100818 Query 69926 ATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGAT 69985 | ||||| || ||| ||||||| ||||| || | || || |||||||| | Sbjct 3100819 AAATACCATCAATGGAATCATCTTTCATGGAAACCAAGAAGCATGAGGACATTTGTGGTC 3100878 Query 69986 GTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCA 70045 | ||| || ||||| || | || || ||||| || || || | |||||| | | Sbjct 3100879 TTGGAGTACCAGCATTGAAAAGGGTTGGTGATGCATGTGTAAAGTACTTTTCACTCAAAA 3100938 Query 70046 GATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGC 70104 | |||||||||||||| || | || | ||| | | | ||||| || | || |||||| Sbjct 3100939 GGTTGTATGTTTCAATTGCAGCATCAACATCTTCTCCG-TGAATACCAACGGCAACACGC 3100997 Query 70105 ATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTT 70164 ||||||||||| || |||| ||| | ||| ||| || ||| ||||||||| | Sbjct 3100998 ATCAACATATGTTGTGGTCTTTCAGCAACTTTTCCATTGATACGCAAAAGGTATGATCGT 3101057 Query 70165 TCCAGAGTTTTAAACCCAAAATAGTTGTA-TGAAAAGTCTCTTTCGTAAATAATAACAGA 70223 || || || || || ||||| |||| || || ||| || | || ||||| || |||| Sbjct 3101058 TCTAGGGTCTTGAAACCAAAGAAGTTATAGTGGAAA-TCACGATCATAAATGATTGCAGA 3101116 Query 70224 ATTTAGTTTATCCTTATATTTGGTAACTATATCCATAACAGTAGGTGAGATAATCGGAGA 70283 | || || | | || || | | | | || |||||| || || Sbjct 3101117 GTCTAATTGTGCTTGATTCTTCATGATTGCGTTGTATGTTGTTTCTGAGATCATTGGGCT 3101176 Query 70284 TCGTTTACCATTTTTAGGATTAACATAGTTGAATAAATCTTCCATTACATCACTAAATAG 70343 | || ||||| |||||||| || | | | ||||||| || || | ||| || Sbjct 3101177 GTGCTTTCCATTGCGTGGATTAACGTATTCGTACAAATCTTTGATGACTTGACTGAACGT 3101236 Query 70344 tttttttGTTTCCTTGTGTAAATT--TGATATGGCTATTCTGGCTGCTAGAATAGCATAG 70401 || ||| || ||||| ||||| ||||| || || | ||||| | | |||||| Sbjct 3101237 CTTACGTGTCTCTTTGTGCAAATTGCTGATA--GCAATACGTGCTGCCAAGACAGCATAA 3101294 Query 70402 TCAGGATGTTGTGTAGTACAAGTA-GCTGCTATTTCCGCAGCTAACGTATCTAATTCTAT 70460 || || || ||| || | ||| || || |||| ||||| || | || | ||| | Sbjct 3101295 TCGGGGTGGGTTGTTGT-CTTGTATGCAGCAGTTTCGGCAGCCAAGTTGTCAAGTTCAAC 3101353 Query 70461 AGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTTTGATAGGATCTAT 70520 ||||| || || | || | || | ||| ||||| ||| |||| ||||| || | Sbjct 3101354 CGTTGTCACACCATCGTAAATACCATCAATGACTTTTCTGGTAATTTCAATAGGGTCAAC 3101413 Query 70521 GAATTCTGTGTTCAGACCATAACATAATTTTCTAATACGAGATGTAATTTTATCAAACAT 70580 || | | | ||||| || |||| ||| || || | || | ||| ||||| | Sbjct 3101414 AAAGTTGGCATCGAGACCGTAGCATAGCTTTGAAACGCGTGCGGTGACTTTGTCAAATTT 3101473 Query 70581 AACATTCTCCTTATTTCCA 70599 || ||||||| |||| Sbjct 3101474 GACGGCCTCCTTACGTCCA 3101492 Score = 215 bits (238), Expect = 7e-51 Identities = 577/868 (66%), Gaps = 28/868 (3%) Strand=Plus/Minus Query 39317 ACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 39376 || ||||| ||| |||||| |||| |||||| || || ||||| || || || Sbjct 1008057 ACGCCCATCTTTGAGTATTCGGCAACCTTTTTCTCAAAGAAGTTAGTCTTTCCGGTTAAA 1007998 Query 39377 GATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAt---ttttttttAAATCCT 39433 || || || ||||| |||| || || || |||||||| ||| |||| ||| || Sbjct 1007997 GAGATGTTCTCCATCCAATCGAATGGGTTGGTTGCATTGTATGCCTTTTCGTTAC--CCA 1007940 Query 39434 AATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTC 39493 || | ||| | | ||| ||| ||||| |||||| ||||| || | ||| Sbjct 1007939 AAGCCACCAATAGA-CGATCAGCACAGAATTCAATGTATTGACACATCAATTTGGAGTTC 1007881 Query 39494 ATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTA-GAAACTCTTTTTCGATGTCTACGGC 39552 ||||| || | || ||||| ||| || |||| |||||| || |||||| || || Sbjct 1007880 ATTCCGATTAAGTTGCATGGTAAAGCATCAGTTAAGAAACT-TTGTTCGATTGAGACAGC 1007822 Query 39553 CTCTGTTATTATCGATGTT-ACTACCTCATCA----CTCGGTGGATGCAATAAATGTTTA 39607 ||||| || ||| |||| ||| ||| | | || | | |||| ||| | Sbjct 1007821 TTCTGTGATAATCT-TGTTCACTGTATCAGGATGAGCGCGCTT-ACGCAA---ATGGCTG 1007767 Query 39608 AACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAA 39667 |||| || || ||||| ||| |||| || |||||||| || || ||||| || || Sbjct 1007766 AACAACAAACATGCGAAATCAGTGTGTAAACCTTCATCTCTGCTGATCAATTCATTGGAG 1007707 Query 39668 AATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCA 39727 ||||| | || ||||| | |||||||| |||||||| || || || || || ||| Sbjct 1007706 AATGTCAAACCGGGCATCAATCCACGCTTCTTGAGCCAGAAGATACTTGCGAATGAACCA 1007647 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA 39787 |||||||| ||||| || || ||||| || || | | || | || || | Sbjct 1007646 CTGAAGAAGATACCTTCAACGGCAGCAAAAGCGACCAAACGTTCAGCA-AATGTGGCCCG 1007588 Query 39788 TTATGT-----ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTT 39842 | ||| |||||||| |||||||||| || || | || || || ||||||| Sbjct 1007587 CT-TGTCAGAAATCCACTTTAGTGCCCAATCTGCCTTTGTTTTGACGACTGGAATTGTTT 1007529 Query 39843 CTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACA 39902 | ||||||| || | | | || |||| || | |||||||| || |||| Sbjct 1007528 CAATAGCATCGAACAAGAACTCGCGTTGATCAGGGTCACGGATGTATGTATCAATCAACA 1007469 Query 39903 GACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTG 39962 | || ||||||| || |||||||| ||| || || || || || || ||||||| Sbjct 1007468 AAGAGTAAGTTTCTGAGTGAATGTTTTCCATCATGATTTGGAAACCATAGAAGCATCTTG 1007409 Query 39963 CTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCAT 40022 |||| | ||| || ||| | |||| ||| |||| |||||||| || || |||| Sbjct 1007408 CTTCTGCTGCTTGAACTTCTCCGCTGAATCGTTCGACCAAGTTTTCATTGACGATACCAT 1007349 Query 40023 CACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATT 40082 || ||||||||| |||||||| || || || |||| ||| | | |||| | Sbjct 1007348 CAGAAGCGGCAAAGAATGCCAAAACGTGAGAGATGAAATGACGTTCGTTGTCGTTCAACT 1007289 Query 40083 TATT---CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACG 40139 | || ||| || | | |||||| || | ||| | ||||| || ||||| || || | Sbjct 1007288 TGTTGTCCCAATCGTGCAAATCTTTGGACAAATCAATCTCTTCTGCGGTCCAGAAAGAAG 1007229 Query 40140 CCTCTGCCTTTTTGTACATGTTCCATAT 40167 | ||||| ||||||||||| | ||| || Sbjct 1007228 CTTCTGCTTTTTTGTACATTTGCCAAAT 1007201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908301991120