Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2 203 3e-47 seq4 138 9e-28 >seq2 Length=3834998 Score = 203 bits (224), Expect = 3e-47 Identities = 398/570 (70%), Gaps = 20/570 (4%) Strand=Plus/Plus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 || ||||||||||||||||||||| | || || || ||||| |||||||| |||||||| Sbjct 1007201 ATTTGGCAAATGTACAAAAAAGCAGAAGCTTCTTTCTGGACCGCAGAAGAGATTGATTTG 1007260 Query 43790 ACTAAAGACTTAGCAC-ATT-GGATTGC-ATTAAAACCACAA-GAAAAACATTTTATATC 43845 | ||||| || |||| ||| ||| | | | ||| |||| ||| ||||| || || Sbjct 1007261 TCCAAAGA-TTTGCACGATTGGGACAACAAGTTGAACGACAACGAACGTCATTTCATCTC 1007319 Query 43846 TTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCG 43905 | |||||||| || ||||| || || || || ||||||||||| ||||| || Sbjct 1007320 TCACGTTTTGGCATTCTTTGCCGCTTCTGATGGTATCGTCAATGAAAACTTGGTCGAACG 1007379 Query 43906 GTT-TGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCA 43964 || ||| |||||||||| | |||||||| |||| || ||||| || ||||| | Sbjct 1007380 ATTCAGCG-GAGAAGTTCAAGCAGCAGAAGCAAGATGCTTCTATGGTTTCCAAATCATGA 1007438 Query 43965 TAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA---TG 44021 | ||||| ||||| || |||| ||| | | |||| ||||| |||||| || || Sbjct 1007439 TGGAAAACATTCACTCAGAAACTTACTCTTTGTTGATTGATACATACATCCGTGACCCTG 1007498 Query 44022 GGC-ACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTG-CGATTAAACATAA 44079 | ||| || || ||||| |||| || |||||| | || | || ||||| || Sbjct 1007499 ATCAACGCGA--GTTC--TTGTTCGATGCTATTGAAACAATTCCAGTCGTCAAAACA-AA 1007553 Query 44080 AGCAGACTGGGCCCTTAAATGGATAAAT-TCAA--ATGATTCTTTTGGAGAACGACTTGT 44136 ||||| ||||| || || ||||| | ||| | | |||| ||||| | || Sbjct 1007554 GGCAGATTGGGCACTAAAGTGGATTTCTGACAAGCGGGCCACATTTGCTGAACGTTTGGT 1007613 Query 44137 CGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTT 44196 ||| ||||| | || ||||| || ||||| || || || || || || ||| | Sbjct 1007614 CGCTTTTGCTGCCGTTGAAGGTATCTTCTTCAGTGGTTCATTCGCAAGTATCTTCTGGCT 1007673 Query 44197 AAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGA 44256 ||||| || || |||||||| || ||||| || || ||||| || || || | ||||| Sbjct 1007674 CAAGAAGCGTGGATTGATGCCCGGTTTGACATTCTCCAATGAATTGATCAGCAGAGATGA 1007733 Query 44257 AGGCTTACATTGCGATTTTGCTTGCTTGTT 44286 ||| ||||| ||||| || || ||||| Sbjct 1007734 AGGTTTACACACTGATTTCGCATGTTTGTT 1007763 Score = 136 bits (150), Expect = 3e-27 Identities = 377/571 (66%), Gaps = 18/571 (3%) Strand=Plus/Minus Query 19357 CTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTT 19416 |||| || || || ||| |||||||| | || || ||| || || ||||| | || Sbjct 1647217 CTTTTCGGTCCTCCAGGTACGGGAAAAACCCTCATGGCCAGACAAATTGGTAAAATGCTA 1647158 Query 19417 ACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGT--C 19474 | || || ||||| || |||||||||||||| || || |||| || ||| | Sbjct 1647157 AATGCACGCGAACCGAAAATCGTCAATGGTCCTGAAATTTTGAACAAATTCGTTGGTGCC 1647098 Query 19475 AATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAG 19534 | | |||||||| | || | ||||| ||||| || ||||| | || | | Sbjct 1647097 AGT--GAAGAAAACATTCGTAAACTCTTTGCCGACGCAGAGAAAGAATACAAG-GAGAAA 1647041 Query 19535 GGCGCAAAAGTTC--TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCA 19592 |||| | ||| | | || ||||| || | ||||||||||| |||||||||||||| Sbjct 1647040 GGCG-ACGAGTCAGGTCTACATATTATCATCTTTGATGAATTGGATGCAATCTGTAAGCA 1646982 Query 19593 AAGAGGTTC------TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTC 19646 | | ||||| |||| | ||| ||| ||| | || || |||||| | |||| Sbjct 1646981 ACGTGGTTCGACTGGAGGTGGCACTGGTGTAGGTGATTCAGTCGTGAATCAATTGTTGTC 1646922 Query 19647 AAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACT 19706 || | || ||||| | ||| ||||||| |||||| | || || ||||| ||| || | Sbjct 1646921 CAAGATGGATGGTGTAGATCAATTGAATAACATTTTATTGATCGGAATGACGAATCGAAT 1646862 Query 19707 GGAATTAATAGA--CAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATT 19764 ||| | || || ||||| | | || || ||||| |||||| | | || ||||| Sbjct 1646861 GGATATGATTGATGAAGCGC--TCCTTCGTCCAGGTCGTTTGGAAGTTCATATGGAAATC 1646804 Query 19765 AACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGA 19824 || ||||| || ||| || ||| |||| | ||| || ||| | ||||| Sbjct 1646803 AATTTACCTGACGAACACGGCCGTCGTCAAATCATTTCCATTCAAACAAACAAGATGCGT 1646744 Query 19825 CAAAATAACCTTTTAAATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAAC 19884 |||| | | | || ||||| ||| | || || ||||||| ||||| || Sbjct 1646743 ACAAATGGAGTCATGGACGATGATGTTGATTTGGACGAGCTTGCAGCTTTGACCAAGAAT 1646684 Query 19885 TATAGCGGCGCAGAACTTGAGGGATTAGTGA 19915 | ||||| |||||| ||| || ||||||| Sbjct 1646683 TTCAGCGGTGCAGAAATTGCAGGTTTAGTGA 1646653 >seq4 Length=1961900 Score = 138 bits (152), Expect = 9e-28 Identities = 341/515 (66%), Gaps = 28/515 (5%) Strand=Plus/Minus Query 40865 AGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACAC 40924 ||||||||| || || || || || ||||| | | |||||||||||||| |||| | || Sbjct 1780583 AGGTGATCTAGGACCAGTATACGGCTTTCAATGGAGACATTTTGGAGCAGAATACAAAAC 1780524 Query 40925 TATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGC-GTTATAGATACGA 40983 | ||||||||| |||| | ||||||||| || | || || |||| | Sbjct 1780523 GTGCGATGATGATTATACAGGACAAGGTGTTGATCAATTA-AGAGAAGTGATTGATAAAA 1780465 Query 40984 TTAAATCCGATCCCGATAGC-CGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTA 41042 ||||| |||| | || ||| | ||||| ||| | || ||||| || | || || Sbjct 1780464 TTAAAAATAATCCA-ACAGATCGAAGAATAATTTTGAGTGCATGGAATCCGGCAGATTTA 1780406 Query 41043 CATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTT----------- 41091 ||||||||| |||||||||||| |||| ||||| |||| ||||| Sbjct 1780405 ACAAAGATGGCATTACCACCTTGTCATATGTTTTGTCAATTTTTCGTTTCTTTACCTGAA 1780346 Query 41092 -----GCAAT--GGT------GAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATG 41138 || | ||| ||||| ||||||||| |||||||| | || |||| | Sbjct 1780345 AGTTCGCCTTCAGGTAAAAAAGAACTTTCATGTCAAATGTATCAACGTTCTTGTGATTTA 1780286 Query 41139 GGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACAC 41198 || |||| ||||| || || || || ||||||||| | || || ||||||| || | Sbjct 1780285 GGTTTAGGAGTCCCATTCAATATCGCAAGTTATGCTTTACTTACACATATGATCGCCAAA 1780226 Query 41199 GTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATT 41258 || || | || | ||||||| ||| | | ||||||| |||| |||| | Sbjct 1780225 GTGACAGGATGTGAAGCACGTGAATTGGTTTTAGCAATGGGAGATGCACATGTTTATAGA 1780166 Query 41259 AATCACATAGAGCCGTTAACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTA 41318 |||| | || || | | ||||||| ||| ||| |||| ||||| || || | | Sbjct 1780165 GATCATGTTGAACCTCTCAAAGAACAATTGAAACGTGAACCAAGACCGTTCCCCAAATTG 1780106 Query 41319 CTTATTAAACGCGCTGTTGAAAACATTGATGATTT 41353 || ||||| | |||||| | ||||||||||| Sbjct 1780105 ATTTGGAAACGTGAAGTTGAAGATATTGATGATTT 1780071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455719048290