Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1 136 3e-27 seq3 100 2e-16 >seq1 Length=6968282 Score = 136 bits (150), Expect = 3e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTC 27091 ||||||||||||||||| || || |||||||| || |||||||| || |||| ||| | Sbjct 6898243 CGCAATACCAAATGTAAGGTGGACTCTTTTTGGATGTTGTAGTCAGCCAATGT-GCGTCC 6898185 Query 27092 GTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTT 27151 |||||| | || ||||| ||| |||||||||| ||||| || || || | ||| ||||| Sbjct 6898184 GTCTTCCAATTGCTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGAATACCTTCTTT 6898125 Query 27152 ATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTAT 27211 || ||||||| ||| | | || | || || || ||| |||||||| || || Sbjct 6898124 GTCTTGGATCTTGGCTTTGACATTATCAATTGTATCACTGCTTTCGACTTCTAGTGTGAT 6898065 Query 27212 AGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || || || || || || ||||||||||||||| Sbjct 6898064 TGTCTTACCAGTAAGTGTCTTGACAAAGATTTGCATA 6898028 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| ||||| || || ||||| || ||||| || ||||| || || | || || Sbjct 6898471 CGCAACACCAAGTGCAAGGTAGATTCCTTTTGGATGTTGTAATCAGCCAAAGTACGGCCG 6898412 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| | |||||||| || | || | ||| ||||| || ||||| | ||| ||||| Sbjct 6898411 TCTTCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCTGGCGGGATACCTTCTTTG 6898352 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || |||||| ||| | | || | ||||| | | ||||||||| | || || Sbjct 6898351 TCTTGAATCTTGGCTTTGACATTGTCAATCGTGTCGGAAGATTCAACTTCCAATGTGATC 6898292 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || || |||| ||||| ||||||||||||||| Sbjct 6898291 GTCTTTCCTGTCAATGTTTTGACAAAGATTTGCATA 6898256 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| ||||| || | || || || ||||| || |||||||| || |||| || Sbjct 6897787 CGCAACACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGCCAAAGTGCGACCG 6897728 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| | || |||||||| | || | | ||||| || || || | ||| ||||| Sbjct 6897727 TCTTCCAATTGCTTACCGGCAAAGATCAATCTTTGTTGGTCTGGTGGGATACCTTCTTTG 6897668 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| ||| | | || | ||| || | || |||||| || || || || Sbjct 6897667 TCTTGGATCTTGGCTTTGACATTGTCAATAGTATCAGAGGATTCAACCTCAAGGGTAATT 6897608 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || |||| || || |||||||||||||| Sbjct 6897607 GTCTTACCAGTCAAGGTCTTGACAAAGATTTGCAT 6897573 >seq3 Length=3165745 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || ||||| ||||| || | ||| | || ||||||||||| ||||| ||| | Sbjct 2529686 CCGCCACGCAAGCGCAAAACGAGATGAAGAGTGCTTTCTTTTTGAATGTTGTAATCGGCC 2529627 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || ||||||| | |||||||| || | || | ||| ||||| || || || Sbjct 2529626 AATGTACGTCCGTCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGTGGA 2529567 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| |||||||| |||||| ||| | | | || | || || | | ||| || Sbjct 2529566 ATACCTTCTTTATCCTGAATCTTGGCTTTGACGTTATCGATTGTATCAGATGATTCCACC 2529507 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | || |||| ||| ||||||| || || ||||||||||||||| Sbjct 2529506 TCCAAGGTAATAGTTTTTCCCGTCAATGTCTTGACAAAGATTTGCATA 2529459 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 27057 TCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116 || ||||| |||||||| ||| || | || | ||||| | || ||||| || | Sbjct 2529422 TCCTTTTGGATATTGTAATCGGCCAATGTACGACCATCTTCCAATTGCTTACCAGCAAAG 2529363 Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176 || ||||| |||||||| || || | ||| ||||| || |||||| || | | | Sbjct 2529362 ATAAGACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGAATCTTGGCCTTGACGTTG 2529303 Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236 || | || || | | |||||| || | ||| || | || || |||| |||||| ||| Sbjct 2529302 TCAATGGTATCCGAAGATTCAACCTCCAAAGTGATCGTCTTTCCGGTCAAAGTTTTTACA 2529243 Query 27237 AAGATTTGCATAG 27249 ||||||||||||| Sbjct 2529242 AAGATTTGCATAG 2529230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934099624496