Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2 194 2e-44 >seq2 Length=3834998 Score = 194 bits (214), Expect = 2e-44 Identities = 905/1407 (64%), Gaps = 45/1407 (3%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||||||||| ||| | ||||||||||||||||| || || ||||| ||| || Sbjct 3099635 GTAGATGTTTGAGGTGAAAGGTTCAAAGCATTCATTGAATCCTAAAATTTGACTGGTAGA 3099694 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 || || ||||| ||||||| ||| || ||||| | ||| | ||| || ||| Sbjct 3099695 AGCAGTAGGCATGGGTGCCAACAATAGCGAATTACGTAAACCGTGCTCTGCAATCTTTTC 3099754 Query 110827 CTTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTG- 110883 || || || ||||| | ||| | | |||| | || || |||||||||| | || Sbjct 3099755 TTTTAGTTCAGACCAGTTCCATAGAT-CGGATGGTGTTACGTT-CCACATGTCATATTGT 3099812 Query 110884 AAGCACCCCTTGGGAC--GCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCA 110941 || ||||| || || || || ||||| | |||||||| | ||| ||| | Sbjct 3099813 AATTCTCCCTT---ACTTGCAGGGGATCCCTCGTATGTTTCATATGTTCCTAATTCTTTA 3099869 Query 110942 GCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC 111001 |||||||| || || ||||| | || || || || ||||||||||| || | ||| Sbjct 3099870 GCCAATTCGCAACTTCTCTCCAAAGCAGCATGGTAGATCGTTTCAAAGATTTGAACGTTC 3099929 Query 111002 -ATCTCCTTGGCTTCATCTGAATC-AAATGCGTAGCGGCACAAAATAAATACATCCGCGA 111059 || | | | ||||| |||||| || || || | | | || ||| |||| || | Sbjct 3099930 AATTTGCGT-GCTTCGGGTGAATCGAAGGGCATA-CCCAAGATCATGAATGCATCTGCAA 3099987 Query 111060 GACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAA 111119 |||| | || || | ||| ||||| | ||| ||||| ||||| | || || || | Sbjct 3099988 GACCGTTGACTCCGATACCGATAGGACGGTGACGCATGTTAGATCTGCGTGCTTCTTCGA 3100047 Query 111120 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACA-ATC---TTTGTG 111175 | || ||| |||| | ||||| | | ||| | || ||| ||| || | Sbjct 3100048 CTGGGTAATAATTGATATCAATAATTTTGTTCAAGTT----ACCACAGATCACTTTGGCA 3100103 Query 111176 ATTTCATG-AAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAG 111234 | | | || || || || | ||||| |||| || | | || || |||| | Sbjct 3100104 ACTGCGTGTAACTTCTTGA-AATCATAAGTCTTTGTTGCAGGGTCAACGTAGGTTGGCAA 3100162 Query 111235 GGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTC 111294 || || || ||||||||||| || || ||||| | ||| || | |||||| Sbjct 3100163 AGCAATCGAAGCCAAATTGCACACGGCAACTTCATCAGGTGCACAGTATTCAATAATTTC 3100222 Query 111295 TGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCA 111354 ||| || ||||| || |||| || || |||||||||||||||||||| || |||| Sbjct 3100223 TGTGCACAAGTTAGAGTTCTTGATGGTACCCAAATTCTTTTGGTTACTTTTTCTGTTTGC 3100282 Query 111355 CGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTT 111414 ||||| ||||| | |||| | || | || || || || || |||| |||||||| | Sbjct 3100283 TGCATCTTTGTACAACATGAATGGGTTACCAGTTTCAGTTTGAGATTCAAGAATAGCATA 3100342 Query 111415 CCA-AACATCGGCGGCTGGTACAATGGCGTTGGC---CCGTCCCTCCGCCTCGTACTTTG 111470 ||| ||| | | || | || || | | || | | ||||| Sbjct 3100343 CCACAACTTTTG----TGCTTTGATCTTCTTTACATATCTGCCTTGCTTTTCGTAAGACT 3100398 Query 111471 TGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGAC 111530 ||| || |||||| || ||||| || | | ||| || | | || || | Sbjct 3100399 CGTAAAGTTTTTCAAATTCTTCACCGTAACAATCAGCCAAACCAGGGGATTCGTTGGGGC 3100458 Query 111531 AGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACA 111590 | | | |||||| |||| || ||||| ||||||||||| | |||||||||||| | Sbjct 3100459 ACATCAAGCACCATTCACCATTTTGTTCAACACGCTTCATGAACAAGTCTGGAATCCATA 3100518 Query 111591 GGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCA 111649 | | | || || || | | || ||| | ||||| | || || || ||||| || Sbjct 3100519 GAGCATAGAATAGTTCACGTGCA-CGAACTTCTTCTTTTCCGTGATTTTTGCGTAAATCC 3100577 Query 111650 AGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTC-- 111707 | ||| || | | ||| | |||||||| |||| || || || | || ||| || Sbjct 3100578 AAGAATTCAAACACATCTGAATGCCATGGTTCAACGTAAACGGCAAAAGCACCCGGTCTC 3100637 Query 111708 -GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATA 111766 || |||||| ||||| || || || | ||||||||| || | ||| || | Sbjct 3100638 TTGTTACCTCCTTGATCAACATAACGAGCAGTTGTGTTAAATACACGCAACATAGGTACG 3100697 Query 111767 ATACCATCTGATTG-ACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATG 111825 ||||| | | ||| || ||||| || ||| ||| | | | | | || Sbjct 3100698 ATACCGT-TACTTGTTCCGTTTGTACCTGCAATGTATGATCCTGTTCCGCGAATGTTGTG 3100756 Query 111826 GATGTGCATCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAGAGTT 111883 |||| | || ||||| || || | ||| || || |||| || | | | || || Sbjct 3100757 AATGTTTAATCCGATACCACCTGCACTCTTGGAAATCATTGCACAAATT--TTGAGTGTA 3100814 Query 111884 CCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGC 111943 |||| ||||| | || || || || || ||| | | |||||| |||||| || Sbjct 3100815 TCATAAATACCATCAATGGAATCATCTTTCATGGAAACCAAGAAGCATGAGGACATTTGT 3100874 Query 111944 GGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC-CTTGGGA 112002 |||||||| |||||||||||||| |||||||||| ||| || | || ||| || Sbjct 3100875 GGTCTTGGAGTACCAGCATTGAAAAGGGTTGGTGATGCATGTGT-AAAGTACTTTTCACT 3100933 Query 112003 CATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGAC 112062 || || |||||| || | ||| ||||| ||||| ||||| || || | || || Sbjct 3100934 CAAAAGGTTGTATGTTTCAATTGCAGCATCAACATCTTCTCCGTGAATACCAACGGCAAC 3100993 Query 112063 CCGCATGAACATGTACTGTGGGGTTTC 112089 ||||| ||||| | ||||| |||| Sbjct 3100994 ACGCATCAACATATGTTGTGGTCTTTC 3101020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031544676800