Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2 105 8e-18 seq4 84.2 3e-11 >seq2 Length=3834998 Score = 105 bits (116), Expect = 8e-18 Identities = 756/1205 (63%), Gaps = 27/1205 (2%) Strand=Plus/Plus Query 118374 GCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCC 118433 || || |||||||| |||| ||||||| || | | ||||||||| | || | Sbjct 3099828 GCAGGGGATCCCTCGTATGTTTCATATGTTCCTAATTCTTTAGCCAATTCGCAACTTCTC 3099887 Query 118434 TCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCA--TTGCCTTGGCCTCGT 118491 || | || || || || || |||||||| || || | |||| |||| | || ||| Sbjct 3099888 TCCAAAGCAGCATGGTAGATCGTTTCAAAGATTTGAACGTTCAATTTGCGT--GCTTCGG 3099945 Query 118492 CGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGC 118551 ||||| || | | | | | || ||| |||| || ||||| | ||| |||| | Sbjct 3099946 GTGAATCGAAGGGCATACCCAAGATCATGAATGCATCTGCAAGACCGTTGACTCCGATAC 3100005 Query 118552 CAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTAT 118611 | || || || || | ||| ||||| | || || || || || ||| |||| ||| Sbjct 3100006 CGATAGGACGGTGACGCATGTTAGATCTGCGTGCTTCTTCGACTGGGTAATAATTGATAT 3100065 Query 118612 CGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAAT 118671 | |||| | || | || || || || | | | | || | ||| | | ||| Sbjct 3100066 CAATAATTTTGTTCAAGTTACCACAGATCACTTTGGCAACTGCGTGTAACTTCTTGAAAT 3100125 Query 118672 CAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGG----GCGATTGACGCCAGATTA 118727 || || | || | || | || || |||| || || || || |||| ||| Sbjct 3100126 CATAAGTCTTTGT---TGCAGGGTCA-ACGTAGGTTGGCAAAGCAATCGAAGCCAAATTG 3100181 Query 118728 CACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTC 118787 ||||| | ||||| || ||| || |||||||| ||||||||||| || || Sbjct 3100182 CACACGGCAACTTCATCAGGTGCACAGTATTCAATAATTTCTGTGCACAAGTTAGAGTTC 3100241 Query 118788 TTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATG 118847 || ||||| ||||| |||||||| || ||| |||| ||||| ||||| | |||| Sbjct 3100242 TTGATGGTACCCAAATTCTTTTGGTTACTTTTTCTGTTTGCTGCATCTTTGTACAACATG 3100301 Query 118848 TATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGC 118907 |||| | || || || ||||| || | |||||||| | ||| | | ||| Sbjct 3100302 AATGGGTTACCAGTTTCAGTTTGAGATTCAAGAATAGCATACCACAACTTTTGTGCTTTG 3100361 Query 118908 ACAGTGGCGTT--GGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTT 118965 | | | || || || | | ||||| ||| || |||||| |||| Sbjct 3100362 ATCTT--CTTTACATATCTGCCTTGCTTTTCGTAAGACTCGTAAAGTTTTTCAAATTCTT 3100419 Query 118966 CACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCAC 119025 |||| || | | || || | | | ||||| | | |||||| |||| Sbjct 3100420 CACCGTAACAATCAGCCAAACCAGGGGATTCGTTGGGGCACATCAAGCACCATTCACCAT 3100479 Query 119026 CCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGAC 119085 | ||||| ||||||||||| | |||||| ||||| || || |||| || || || Sbjct 3100480 TTTGTTCAACACGCTTCATGAACAAGTCTGGAATCCATAGAGCATAGAATAGTTCACGTG 3100539 Query 119086 AGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGT 119145 ||| ||||||| | || ||||| || || ||||| || || | | ||| | | Sbjct 3100540 CACGAACTTCTTCTTTTCCGTGATTTTTGCGTAAATCCAAGAATTCAAACACATCTGAAT 3100599 Query 119146 GCCACGGTTCCAGGTACACCGCGATTG-ACCCCTTACGACG--ACCAGCCTGGTTTACAT 119202 |||| ||||| | ||| || || | | |||| | | ||| | || | |||| Sbjct 3100600 GCCATGGTTCAACGTAAACGGCAAAAGCACCCGGTCTCTTGTTACCTCCTTGATCAACAT 3100659 Query 119203 ACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTG 119262 | | ||||| | |||||||||||| | ||| || | |||||| | | || |||| Sbjct 3100660 AACGAGCAGTTGTGTTAAATACACGCAACATAGGTACGATACCGTTACTTGTTCCGTTTG 3100719 Query 119263 TCCCCCGAATACGAGA-CTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCT 119321 | || ||| || | | || | | | | ||| |||| | || ||||| ||| Sbjct 3100720 TACCTGCAATGTATGATCCTGTT-CCGCGAATGTTGTGAATGTTTAATCCGATACCACCT 3100778 Query 119322 GCCCACTTTGAGAT--TTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGT 119379 || | ||| || || |||| | | | |||| | | || || ||||| || || | Sbjct 3100779 GCACTCTTGGAAATCATTGCACAAATT--TTGAGTGTATCATAAATACCATCAATGGAAT 3100836 Query 119380 CACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGA 119439 || | || | | | | |||||| |||||||| || || || |||||||| |||| Sbjct 3100837 CATCTTTCATGGAAACCAAGAAGCATGAGGACATTTGTGGTCTTGGAGTACCAGCATTGA 3100896 Query 119440 AGAGAGTTGGTGTCGCGTGGATGAACATAC-CTTGGGACATCTTGTCGTAGGTCTCCAAG 119498 | || ||||||| || || | || ||| || || || ||| || || | Sbjct 3100897 AAAGGGTTGGTGATGCATGTGT-AAAGTACTTTTCACTCAAAAGGTTGTATGTTTCAATT 3100955 Query 119499 ACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGT 119558 | || || ||||| ||||||||||| | | || ||||| ||||| | ||| ||| Sbjct 3100956 GCAGCATCAACATCTTCTCCGTGAATACCAACGGCAACACGCATCAACATATGTTGTGGT 3101015 Query 119559 GTTTC 119563 |||| Sbjct 3101016 CTTTC 3101020 >seq4 Length=1961900 Score = 84.2 bits (92), Expect = 3e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 179062 GCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATA 179121 |||||||| || ||||| | |||||| || |||||||| ||| ||||| ||||| | Sbjct 1334109 GCATCTTTACCTCCCATCATACGCGTACCGAATTGACCGTTTGGTAAAAGGATATTGACA 1334050 Query 179122 TTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTC 179180 ||||||| || | |||| | |||||| |||||||| || || || | | ||| Sbjct 1334049 TTGTTTGCTCCAACAAAGTCTTGGGCCAAATTGACAATAGTCATTTGCAAACTTGT-TTC 1333991 Query 179181 ACCGTGATGGTAAGC 179195 ||||||||||||||| Sbjct 1333990 ACCGTGATGGTAAGC 1333976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434751634480