Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2 228 9e-55 >seq2 Length=3834998 Score = 228 bits (252), Expect = 9e-55 Identities = 908/1400 (65%), Gaps = 33/1400 (2%) Strand=Plus/Minus Query 104216 GAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGAT 104275 |||| ||||| | ||||| ||||| || ||| | |||||||| || ||||| ||||| Sbjct 3101020 GAAAGACCACAACATATGTTGATGCGTGTTGCCGTTGGTATTCACGGAGAAGATGTTGAT 3100961 Query 104276 TCTGTCTTGGAGACATACGACAAGATGTCCCAAG-GTATGTTCATTCACGCAACACCAAC 104334 ||| | || |||||| || || || ||| || | || ||| ||||||| Sbjct 3100960 GCTGCAATTGAAACATACAACCTTTTGAGTGAAAAGTACTTT-ACACATGCATCACCAAC 3100902 Query 104335 CCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAA 104394 ||| |||||||||||||| |||||||| ||||||||| |||||| | | ||| || Sbjct 3100901 CCTTTTCAATGCTGGTACTCCAAGACCACAAATGTCCTCATGCTTCTTGGTTTCCATGAA 3100842 Query 104395 GGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAAG 104452 || || || || | ||||| |||| || || | | | || |||| || || ||| Sbjct 3100841 AGATGATTCCATTGATGGTATTTATGATACACTCAA--AATTTGTGCAATGATTTCCAAG 3100784 Query 104453 TGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGG 104512 | || || ||||| || | |||| || | | | | | ||| ||| Sbjct 3100783 AGTGCAGGTGGTATCGGATTAAACATTCACAACATTCGCGGAACAGGATCATACATTGCA 3100724 Query 104513 GGGACAAATGGT-CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGC 104571 || ||||| || ||| | | ||||| | || ||| | || ||||||||| | || || Sbjct 3100723 GGTACAAACGGAACAAGTA-ACGGTATCGTACCTATGTTGCGTGTATTTAACACAACTGC 3100665 Query 104572 GCGCTATGTAAATCAAGCTGGGCGTC---GAAAGGGATCTATCGCAGTCTATCTTGAGCC 104628 || ||||| |||||| || || ||| || | || || || |||| || Sbjct 3100664 TCGTTATGTTGATCAAGGAGGTAACAAGAGACCGGGTGCTTTTGCCGTTTACGTTGAACC 3100605 Query 104629 ATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGC 104688 |||||| | ||| | | || ||| | || || || || || || | || || | Sbjct 3100604 ATGGCATTCAGATGTGTTTGAATTCTTGGATTTACGCAAAAATCACGGAAAAGAAGAAGT 3100545 Query 104689 GCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTG 104747 || ||| || || || |||| ||||| ||||||||||| | ||||||||| | |||| Sbjct 3100544 TCG-TGCACGTGAACTATTCTATGCTCTATGGATTCCAGACTTGTTCATGAAGCGTGTTG 3100486 Query 104748 AGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCG 104807 | | | ||| | |||| | | || || || | | |||||| | | ||| Sbjct 3100485 AACAAAATGGTGAATGGTGCTTGATGTGCCCCAACGAATCCCCTGGTTTGGCTGATTGTT 3100426 Query 104808 TGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGAC-TGC- 104865 ||||| || |||||| |||||| ||| | ||| ||| || || || Sbjct 3100425 ACGGTGAAGAATTTGAAAAACTTTACG---AGTCTTACGAA-AAGCAAGGCAGATATGTA 3100370 Query 104866 --GACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGT 104923 || | | ||| | ||||| | |||||||| | |||||||| || |||||| Sbjct 3100369 AAGAAGATCAAAGCACAAAAGTTGTGGTATGCTATTCTTGAATCTCAAACTGAAACTGGT 3100310 Query 104924 ACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGT 104983 | |||| |||| | |||||||| || ||| ||| ||||| ||||||||||||||| Sbjct 3100309 AACCCATTCATGTTGTACAAAGATGCAGCAAACAGAAAAAGTAACCAAAAGAATTTGGGT 3100250 Query 104984 GTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAG-ACA-AAGATGAGA 105041 ||||||| || || | || |||||||| | ||| ||| | || ||||| Sbjct 3100249 ACCATCAAGAACTCTAACTTGTGCACAGAAATTATTGAA--TACTGTGCACCTGATGAAG 3100192 Query 105042 CGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGA 105101 || ||||| || | || || || ||| | || | || || || || | ||||||| Sbjct 3100191 TTGCCGTGTGCAATTTGGCTTCGATTGCTTTGCCAACCTACGTTGACCCTGCAACAAAGA 3100132 Query 105102 CATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAG 105161 | | ||||| | || | |||| |||| | ||| || ||| | |||| | Sbjct 3100131 CTTATGATTTCAAGAAGTTACACGCAGTTGCCAAAGTGATCTGTGGTAACTTGAACAAAA 3100072 Query 105162 TTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTC 105221 ||||||||| |||| |||||| || || || || | |||||| ||| | ||||||| Sbjct 3100071 TTATTGATATCAATTATTACCCAGTCGAAGAAGCACGCAGATCTAACATGCGTCACCGTC 3100012 Query 105222 CAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACG-CATTT 105280 | || ||| |||| || | ||||| || |||| |||||| | | | | | | | || Sbjct 3100011 CTATCGGTATCGGAGTCAACGGTCTTGCAGATGCATTCATGATCT-TGGGTATGCCCTTC 3099953 Query 105281 GATTCCGACGAAGCGAAGGAAA-TCAATGCGCGCATATTTGAGACCATGTATCACGCCGC 105339 ||||| |||||| | | ||| | || | | || ||||| || || || || || || Sbjct 3099952 GATTCACCCGAAGC-ACGCAAATTGAACGTTCAAATCTTTGAAACGATCTACCATGCTGC 3099894 Query 105340 TCTTGAGGCGAGTTCAGAGTTGGC-AGAGGTTGATGGTCCATATGAAACCTTTGAGGGTT 105398 | | ||| |||| || ||||| | || | | || |||||||||| | ||||| | Sbjct 3099893 TTTGGAGAGAAGTTGCGAATTGGCTAAAGAATTA-GGAACATATGAAACATACGAGGGAT 3099835 Query 105399 CTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCAC 105457 | || || | || | | |||| ||| |||| |||| || | |||| | || Sbjct 3099834 CCCCTGCAAGTAAGGGAGAATTACAATATGACATGT-GGAACGTAACACCATCCGATCTA 3099776 Query 105458 TACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTC 105517 | ||||| | || || ||| || ||| | ||| | ||||| || | Sbjct 3099775 TGGAACTGGTCTGAACTAAAAGAAAAGATTGCAGAGCACGGTTTACGTAATTCGCTATTG 3099716 Query 105518 ATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 105577 |||| || ||||| || || || ||| ||||| || || ||||||||||||||| Sbjct 3099715 TTGGCACCCATGCCTACTGCTTCTACCAGTCAAATTTTAGGATTCAATGAATGCTTTGAA 3099656 Query 105578 CCCTACACGACGAACATCTA 105597 || | ||| | |||||||| Sbjct 3099655 CCTTTCACCTCAAACATCTA 3099636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260377135920