Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2 100 3e-16 >seq2 Length=3834998 Score = 100 bits (110), Expect = 3e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 |||||||||||||| ||||||||||| || || | | || ||||| | |||||||||| Sbjct 1007736 CCTTCATCTCTGCTGATCAATTCATTGGAGAATGTCAAACCGGGCATCAATCCACGCTTC 1007677 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || | ||| ||||| ||| ||||||||||||||||| ||||| || ||||| Sbjct 1007676 TTGAGCCAGAAGATACTTGCGAATGAACCACTGAAGAAGATACCTTCAACGGCAGCAAAA 1007617 Query 74889 GCGACAAGGCGTT 74901 ||||| | |||| Sbjct 1007616 GCGACCAAACGTT 1007604 Score = 96.9 bits (106), Expect = 4e-15 Identities = 368/567 (65%), Gaps = 8/567 (1%) Strand=Plus/Minus Query 53192 TTCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTA 53250 || ||||| || ||| | ||||| ||||| || || | | || || ||| || || Sbjct 3101002 TTGATGCGTGTTGCCGTTGGTATTCACGGAGAAGATGTTGATGC-TGCAATTGAAACATA 3100944 Query 53251 CGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTAC 53310 | || | |||| ||||||||||||| || || | |||||||| ||||| |||||||| Sbjct 3100943 CAACCTTTTGAGTGAAAAGTACTTTACACATGCATCACCAACCCTTTTCAATGCTGGTAC 3100884 Query 53311 GAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGG 53370 || || ||||| |||||| |||| | ||||| ||||| || || || || Sbjct 3100883 TCCAAGACCACAAATGTCCTCATGCTTCTTGGTTTCCATGAAAGATGATTCCATTGATGG 3100824 Query 53371 CATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT 53430 || || || || ||||| ||||| || |||||| | | ||||||||||| | Sbjct 3100823 TATTTATGATACACTCAAAATTTGTGCAATGATTTCCAAGAGTGCAGGTGGTATCGGATT 3100764 Query 53431 CCAC-TGCTCGAACGTCCGTGCGAAC-GGCACACCAATCAAGGGGACGAACGGCGTCGCC 53488 || | | | ||| | || | |||| || || || || || ||||| Sbjct 3100763 AAACATTCAC-AACATTCGCG-GAACAGGATCATACATTGCAGGTACAAACGGAACAAGT 3100706 Query 53489 GATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGT 53548 | || ||||| |||||| | || || || |||| || || || || || | || || Sbjct 3100705 AACGGTATCGTACCTATGTTGCGTGTATTTAACACAACTGCTCGTTATGTTGATCAAGGA 3100646 Query 53549 GGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATG 53608 ||| ||| | ||| | || ||| | ||| | || || ||||| | || | | Sbjct 3100645 GGTAACAAGAGACCGGGTGCTTTTGCCGTTTACGTTGAACCATGGCATTCAGATGTGTTT 3100586 Query 53609 GAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTT 53667 || || | || | || ||||| || | ||||| | || ||| ||||| || || Sbjct 3100585 GAATTCTTGGATTTACGCAAAAATCACGGAAAAGAAGAAGTTCG-TGCACGTGAACTATT 3100527 Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTA 53727 ||||| |||||||| ||| | |||||| | || || | | | || |||| Sbjct 3100526 CTATGCTCTATGGATTCCAGACTTGTTCATGAAGCGTGTTGAACAAAATGGTGAATGGTG 3100467 Query 53728 CCTGATGTGCCCGAACGAGTGCCCCGG 53754 | |||||||||| ||||| | ||| || Sbjct 3100466 CTTGATGTGCCCCAACGAATCCCCTGG 3100440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215603268400