Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq3 113 3e-20 seq1 111 1e-19 >seq3 Length=3165745 Score = 113 bits (124), Expect = 3e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 34492 CGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCG 34551 ||||| || | ||| |||||||| || ||||||||||| ||||| | | ||| || || Sbjct 2529674 CGCAAAACGAGATGAAGAGTGCTTTCTTTTTGAATGTTGTAATCGGCCAATGTACGTCCG 2529615 Query 34552 TCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTG 34611 ||||| | ||||||||| ||||| || ||||| |||||||| || || | || || || Sbjct 2529614 TCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGTGGAATACCTTCTTTA 2529555 Query 34612 TCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTAT 34670 || ||| || | ||| ||| || ||||| || ||||| |||| ||| || Sbjct 2529554 TC-CTGAATCTTGGCTTTGACGTTATCGATTGTATCAGATGATTCCACCTCCAAGGTAAT 2529496 Query 34671 CGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || || || ||||| || ||||| Sbjct 2529495 AGTTTTTCCCGTCAATGTCTTGACAAAGATTTGCAT 2529460 >seq1 Length=6968282 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||||||||||||||| || | || |||||||| ||||| ||||| | Sbjct 6898483 CCACCACGAAGACGCAACACCAAGTGCAAGGTAGATTCCTTTTGGATGTTGTAATCAGCC 6898424 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || ||||||| | ||||||||| ||||| || ||||| |||||||| ||||| Sbjct 6898423 AAAGTACGGCCGTCTTCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCTGGCGGG 6898364 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| ||| || | ||| || | ||| ||||| || || Sbjct 6898363 ATACCTTCTTTGTCT-TGAATCTTGGCTTTGACATTGTCAATCGTGTCGGAAGATTCAAC 6898305 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || ||||| || || || || ||||| ||||| || ||||| Sbjct 6898304 TTCCAATGTGATCGTCTTTCCTGTCAATGTTTTGACAAAGATTTGCAT 6898257 Score = 102 bits (112), Expect = 5e-17 Identities = 158/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG--AAAGTGTTC 34546 |||||||||||||| || || ||| ||||||||| ||||| || || | |||||| | Sbjct 6897790 AGACGCAACACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGCCAAAGTG--C 6897733 Query 34547 GCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCT 34606 | ||||||| | ||| ||||||||||| || || | |||||||| || || | || | Sbjct 6897732 GACCGTCTTCCAATTGCTTACCGGCAAAGATCAATCTTTGTTGGTCTGGTGGGATACCTT 6897673 Query 34607 CCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACG 34665 | |||||| |||| || | ||| || | ||| || || | || || || | | Sbjct 6897672 CTTTGTCTTGGATC-TTGGCTTTGACATTGTCAATAGTATCAGAGGATTCAACCTCAAGG 6897614 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| || || || || ||||| || ||||| Sbjct 6897613 GTAATTGTCTTACCAGTCAAGGTCTTGACAAAGATTTGCAT 6897573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729377525514