Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1 138 8e-28 seq3 125 5e-24 >seq1 Length=6968282 Score = 138 bits (152), Expect = 8e-28 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || |||||||| || || ||| | || |||||||||| Sbjct 6898029 ATGCAAATCTTTGTCAAGACACTTACTGGTAAGACAATCACACTAGAAGTCGAAAGCAGT 6898088 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| |||||| || || |||||||||||| |||| || | Sbjct 6898089 GATACAATTGATAAT--GTCAAAGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGACC 6898146 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| | ||||| || || || |||||||| |||| ||||| ||| | || |||| Sbjct 6898147 AACAACGTCTCATTTTCGCTGGTAAGCAATTGGAAGACGGACGCACATTGGCTGACTACA 6898206 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||||||| ||| || |||||||| |||||| | ||||| || Sbjct 6898207 ACATCCAAAAAGAGTCCACCTTACATTTGGTATTGCGTCTCCGTGGTGG 6898255 Score = 114 bits (126), Expect = 9e-21 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| ||||| || ||| || || | || || ||| | | Sbjct 5661208 ATGCAAATTTTTGTAAAAACCCTTACGGGTAAAACAATCACCCTCGAGGTTGAATCAAAC 5661149 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| || || ||| || ||||| |||||| |||| || | Sbjct 5661148 GATACTATTGACAAT--GTTAAGGCAAAGATTCAAGACAAGGAAGGTATTCCACCAGACC 5661091 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| ||||| ||||| || || |||||||| || | || | ||| | ||||||| Sbjct 5661090 AACAACGTTTAATCTTTGCTGGTAAGCAATTGGAAGATGGGCGTACTTTGGCTGATTACA 5661031 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| || ||| ||||| ||||| |||||| | ||||| || Sbjct 5661030 ACATCCAAAAGGAATCCACCTTGCACTTGGTCTTGCGTCTCCGTGGTGG 5660982 Score = 114 bits (126), Expect = 9e-21 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| ||||| | || || || || ||| | || || ||| || Sbjct 6898257 ATGCAAATCTTTGTCAAAACATTGACAGGAAAGACGATCACATTGGAAGTTGAATCTTCC 6898316 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| ||||| |||||| || || |||||||||||| | ||| || | Sbjct 6898317 GACACGATTGACAAT--GTCAAAGCCAAGATTCAAGACAAAGAAGGTATCCCGCCAGACC 6898374 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| || || ||||| || ||||||||||| |||| || | ||| | ||||||| Sbjct 6898375 AACAACGTTTGATCTTTGCAGGTAAACAATTGGAAGACGGCCGTACTTTGGCTGATTACA 6898434 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| || || ||||| ||||| |||||| | ||||| || Sbjct 6898435 ACATCCAAAAGGAATCTACCTTGCACTTGGTGTTGCGTCTTCGTGGTGG 6898483 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| || || || || || || || ||| | || |||||||||| | Sbjct 6897801 ATGCAAATTTTTGTCAAGACACTAACAGGAAAGACAATCACACTAGAAGTCGAAAGCAGC 6897860 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | | |||||| || || |||||||||||| | || || || Sbjct 6897861 GACACTATTGAYAACGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 6897920 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| || || ||||| || ||||||||||| |||| ||||| ||| | ||||||||| Sbjct 6897921 CAACGTTTGATCTTTGCAGGTAAACAATTGGAAGACGGACGCACATTGGCTGATTACAAC 6897980 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || ||||| || | || ||||| ||||| | ||||| || Sbjct 6897981 ATTCAGAAAGAATCTACACTCCACTTGGTCTTGCGCCTCCGTGGTGG 6898027 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || | ||||| || ||||| |||| || ||| | | Sbjct 6897573 ATGCAAATCTTTGTCAAGACCTTGACTGGTAAGACAATTACCCTTGAGGTTGAATCCTCT 6897632 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| |||||| || || |||||||||||| | || || | Sbjct 6897633 GATACTATTGACAAT--GTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACC 6897690 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||| | || || |||||||| || |||||||| |||| |||| ||| | || |||| Sbjct 6897691 AACAAAGATTGATCTTTGCCGGTAAGCAATTGGAAGACGGTCGCACTTTGGCTGACTACA 6897750 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| ||| | || ||||| |||||| | ||||| || Sbjct 6897751 ACATCCAAAAGGAGTCCACACTTCACTTGGTGTTGCGTCTCCGTGGTGG 6897799 >seq3 Length=3165745 Score = 125 bits (138), Expect = 5e-24 Identities = 167/232 (72%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || | || || ||| |||||| | || || ||| | Sbjct 2529460 ATGCAAATCTTTGTCAAGACATTGACGGGAAAAACTATTACCTTGGAGGTGGAATCATCT 2529519 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || |||||||| |||||| || || || ||||||||| |||| | Sbjct 2529520 GA-----TACAATCGATAACGTCAAAGCCAAGATTCAGGATAAAGAAGGTATTCCACCAG 2529574 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||| || || ||||| || |||||||| || |||| ||| | ||| |||||| Sbjct 2529575 ACCAACAACGTTTGATCTTTGCTGGTAAACAATTAGAAGACGGACGTACATTGGCCGATT 2529634 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| |||||||| |||||| | ||| | |||||||| ||||||||||| Sbjct 2529635 ACAACATTCAAAAAGAAAGCACTCTTCATCTCGTTTTGCGCTTGCGTGGCGG 2529686 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||||||| |||| || || ||||| | || ||||| || || |||||||| Sbjct 2529325 GACAAAGAAGGTATTCCACCAGATCAACAACGTCTTATCTTTGCTGGTAAGCAATTGGAA 2529384 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | ||| |||||||||| |||||||| || ||||| | ||| | |||||| Sbjct 2529385 GATGGTCGTACATTGGCCGATTACAATATCCAAAAGGAAAGCACACTCCATCTCGTTTTG 2529444 Query 28003 CGTTTGCGTGGCGG 28016 | || ||||| || Sbjct 2529445 AGATTACGTGGTGG 2529458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355862148449766